JWS-112 Bumping version of T-Coffee to version 11.00.8cbe486.

[jabaws.git] / binaries / src / tcoffee / example / sproteases2_small.aln

diff --git a/binaries/src/tcoffee/example/sproteases2_small.aln b/binaries/src/tcoffee/example/sproteases2_small.aln
new file mode 100644 (file)
index 0000000..3ac3598
--- /dev/null
+++ b/binaries/src/tcoffee/example/sproteases2_small.aln
@@ -0,0 +1,70 @@
+CLUSTAL FORMAT for T-COFFEE Version_4.39 [http://www.tcoffee.org], CPU=5.44 sec, SCORE=52, Nseq=9, Len=309 
+
+sp|O35205|GRAK_MOUSE   M------------------------RFSSWALVSLVAGVYMSSECFHTEIIGGREVQPHS
+sp|Q7YRZ7|GRAA_BOVIN   M------------------NIPFPFSFPPAICLLLIPGVFPV-SC--EGIIGGNEVAPHT
+sp|P03953|CFAD_MOUSE   M------------------------HSSVYFVALVILGAAVCAAQPRGRILGGQEAAAHA
+sp|Q9Y5K2|KLK4_HUMAN   M-----------------ATAGNPWGWFLGYLILGVAGSL--VSGSCSQIINGEDCSPHS
+sp|P08246|ELNE_HUMAN   M------------------TLGRRLACL--FLACVLPALLLGGTALASEIVGGRRARPHA
+sp|Q00871|CTRB1_PENVA  MIGKLSLLLVCVAVASGNPAAGKPWHWK--SPKPL--VDPRIHVNATPRIVGGVEATPHS
+sp|P08884|GRAE_MOUSE   M-----------------------------PPVLILLTLLLPLGAGAEEIIGGHVVKPHS
+sp|Q06606|GRZ2_RAT     M-----------------------------FLFLFFLVAILPVNTEGGEIIWGTESKPHS
+sp|P21844|MCPT5_MOUSE  M---H-------------------------LLTLHLLLLLLGSSTKAGEIIGGTECIPHS
+                       *                                                *: *    .*:
+
+sp|O35205|GRAK_MOUSE   RPFMASIQYRSK----HICGGVLIHPQWVLTAAHCYSWFPRGHSPTVVLGAHSLSKN-EP
+sp|Q7YRZ7|GRAA_BOVIN   RRYMALIK--GL----KLCAGALIKENWVLTAAHCDL----KGNPQVILGAHSTSHK-EK
+sp|P03953|CFAD_MOUSE   RPYMASVQVNGT----HVCGGTLLDEQWVLSAAHCMDGVTDDDSVQVLLGAHSLSAP-EP
+sp|Q9Y5K2|KLK4_HUMAN   QPWQAALVMENE----LFCSGVLVHPQWVLSAAHCFQ-----NSYTIGLGLHSLEADQEP
+sp|P08246|ELNE_HUMAN   WPFMVSLQLRGG----HFCGATLIAPNFVMSAAHCVANV-NVRAVRVVLGAHNLSRR-EP
+sp|Q00871|CTRB1_PENVA  WPHQAALFIDDM----YFCGGSLISSEWVLTAAHCMDGA---GFVEVVLGAHNIRQN-EA
+sp|P08884|GRAE_MOUSE   RPYMAFVKSVDIEGNRRYCGGFLVQDDFVLTAAHCRN-----RTMTVTLGAHNIKAK-EE
+sp|Q06606|GRZ2_RAT     RPYMAFIKFYDSNSEPHHCGGFLVAKDIVMTAAHCNG-----RNIKVTLGAHNIKKQ-EN
+sp|P21844|MCPT5_MOUSE  RPYMAYLEIVTSENYLSACSGFLIRRNFVLTAAHCAG-----RSITVLLGAHNKTSK-ED
+                           . :           *.. *:  : *::****           : ** *.     * 
+
+sp|O35205|GRAK_MOUSE   MKQTFEIKKFIPFSRLQSGSASHDIMLIKLRTAAELNKNVQLLHLGSKN-YLRDGTKCQV
+sp|Q7YRZ7|GRAA_BOVIN   LDQVFSIKKAIPYPCFDPQTFEGDLQLLQLEGKATMTKAVGILQLPRTEDDVKPHTKCHV
+sp|P03953|CFAD_MOUSE   YKRWYDVQSVVPHPGSRPDSLEDDLILFKLSQNASLGPHVRPLPLQYEDKEVEPGTLCDV
+sp|Q9Y5K2|KLK4_HUMAN   GSQMVEASLSVRHPEYNRPLLANDLMLIKLDESVSESDTIRSISIASQCP--TAGNSCLV
+sp|P08246|ELNE_HUMAN   TRQVFAVQRIFEN-GYDPVNLLNDIVILQLNGSATINANVQVAQLPAQGRRLGNGVQCLA
+sp|Q00871|CTRB1_PENVA  SQVSITSTDFFTHENWNSWLLTNDIALIRLPSPVSLNSNIKTVKLPSSDVSV--GTTVTP
+sp|P08884|GRAE_MOUSE   TQQIIPVAKAIPHPDYNATAFFSDIMLLKLESKAKRTKAVRPLKLPRPNARVKPGDVCSV
+sp|Q06606|GRZ2_RAT     T-QVISVVKAKPHENYDRDSHFNDIMLLKLERKAQLNGVVKTIALPRSQDWVKPGQVCTV
+sp|P21844|MCPT5_MOUSE  TWQKLEVEKQFLHPKYDENLVVHDIMLLKLKEKAKLTLGVGTLPLSANFNFIPPGRMCRA
+                                              *: :::*   .     :    :               
+
+sp|O35205|GRAK_MOUSE   TGWGTTKPDLLTASDTLREVTVTIISRKRCNSQSYYNHKPVITKDMICAGDARGQKDSCK
+sp|Q7YRZ7|GRAA_BOVIN   AGWGSTKKDACQMSNALREANVTVIDRKICNDAQHYNFNPVIDLSMICAGGRKGEDDSCE
+sp|P03953|CFAD_MOUSE   AGWGVVTH-AGRRPDVLHQLRVSIMNRTTCNLRTY--HDGVVTINMMCAE--SNRRDTCR
+sp|Q9Y5K2|KLK4_HUMAN   SGWGLLANG--RMPTVLQCVNVSVVSEEVCSKL----YDPLYHPSMFCAGGGQDQKDSCN
+sp|P08246|ELNE_HUMAN   MGWGLLGRNR-GIASVLQELNVTVVTS-LCR------------RSNVCTLVRGRQAGVCF
+sp|Q00871|CTRB1_PENVA  TGWGRPSDSASGISDVLRQVNVPVMTNADCDSVYGI-----VGDGVVCIDG-TGGKSTCN
+sp|P08884|GRAE_MOUSE   AGWGSRSINDTKASARLREAQLVIQEDEECKKRFRH----YTETTEICAGDLKKIKTPFK
+sp|Q06606|GRZ2_RAT     AGWGRLAN--CTSSNTLQEVNLEVQKGQKCQDMSED----YNDSIQLCVGNPSEGKATGK
+sp|P21844|MCPT5_MOUSE  VGWGRTNVNE-PASDTLQEVKMRLQEPQACKHFTS-----FRHNSQLCVGNPKKMQNVYK
+                        ***         .  *:   : :     *                .*            
+
+sp|O35205|GRAK_MOUSE   GDSGGPLICKGIFHALVSQGYK-CGIAKKPGIYTLLTKKYQTWIKSKLAPSR--------
+sp|Q7YRZ7|GRAA_BOVIN   GDSGSPLICDNVFRGVTSFGK--CGNPQKPGIYILLTKKHLNWIKKTIAGAI--------
+sp|P03953|CFAD_MOUSE   GDSGSPLVCGDAVEGVVTWGSRVCGNGKKPGVYTRVSS-YRMWIENITNGNM--------
+sp|Q9Y5K2|KLK4_HUMAN   GDSGGPLICNGYLQGLVSFGKAPCGQVGVPGVYTNLCK-FTEWIEKTVQAS---------
+sp|P08246|ELNE_HUMAN   GDSGSPLVCNGLIHGIASFVRGGCASGLYPDAFAPVAQ-FVNWIDSIIQRSEDNPCPHPR
+sp|Q00871|CTRB1_PENVA  GDSGGPLNLNGMTYGITSFGSSAGCEKGYPAAFTRVYY-YLDWIQQKTGVTP--------
+sp|P08884|GRAE_MOUSE   GDSGGPLVCDNKAYGLLAYAKNRT---ISSGVFTKIVH-FLPWISRNMKLL---------
+sp|Q06606|GRZ2_RAT     GDSGGPFVCDGVAQGIVSYRLCTG---TLPRVFTRISS-FIPWIQKTMKVLQ--------
+sp|P21844|MCPT5_MOUSE  GDSGGPLLCAGIAQGIASYVHRNA---KPPAVFTRISH-YRPWINKILREN---------
+                       ****.*:   .   .: :           .  :  :   .  **.               
+
+sp|O35205|GRAK_MOUSE   -------AH
+sp|Q7YRZ7|GRAA_BOVIN   ---------
+sp|P03953|CFAD_MOUSE   -------TS
+sp|Q9Y5K2|KLK4_HUMAN   ---------
+sp|P08246|ELNE_HUMAN   DPDPASRTH
+sp|Q00871|CTRB1_PENVA  ---------
+sp|P08884|GRAE_MOUSE   ---------
+sp|Q06606|GRZ2_RAT     -------QS
+sp|P21844|MCPT5_MOUSE  ---------
+                                
+
+
+