JWS-112 Bumping version of T-Coffee to version 11.00.8cbe486.
[jabaws.git] / binaries / src / tcoffee / example / sproteases_small.b62_aln
diff --git a/binaries/src/tcoffee/example/sproteases_small.b62_aln b/binaries/src/tcoffee/example/sproteases_small.b62_aln
new file mode 100644 (file)
index 0000000..f1d46e3
--- /dev/null
@@ -0,0 +1,130 @@
+CLUSTAL FORMAT for T-COFFEE Version_4.38 [http://www.tcoffee.org], CPU=28.48 sec, SCORE=50, Nseq=19, Len=335 
+
+sp|O35205|GRAK_MOUSE   M-----RFSS--WALVSLVAG-VYMSSE----------------------CFHTEIIGGR
+sp|Q7YRZ7|GRAA_BOVIN   M-N---IPFPFSFPPAICLLL-IPGVFP----------------------VSCEGIIGGN
+sp|P08884|GRAE_MOUSE   M------------PPVLILLT-LLLPLG----------------------AGAEEIIGGH
+sp|Q06606|GRZ2_RAT     M------------FLFLFFLV-AILPVN----------------------TEGGEIIWGT
+sp|P21844|MCPT5_MOUSE  M----------H-LLTLHLLL-LLLGSS----------------------TKAGEIIGGT
+sp|P03953|CFAD_MOUSE   M-----HSSV--YFVALVILG-AAVCAA----------------------QPRGRILGGQ
+sp|P00773|ELA1_RAT     M------------LRFLVFAS-LVLYGHST----------------QDFPETNARVVGGA
+sp|Q00871|CTRB1_PENVA  M---IGK------LSLLLVCV-AVASGNPAAGKPWHWKSPKPLVDPRIHVNATPRIVGGV
+sp|P08246|ELNE_HUMAN   M-TLGRRLAC--LFLACVLPA-LLLGGT----------------------ALASEIVGGR
+sp|P20160|CAP7_HUMAN   M----TRLTV--LALLAGLLA-SSRAGS----------------------SPLLDIVGGR
+sp|P80015|CAP7_PIG     -------------------------------------------------------IVGGR
+sp|Q03238|GRAM_RAT     ------------LLLLLALKT-LWAVGN----------------------RFEAQIIGGR
+sp|P00757|KLKB4_MOUSE  M-----------WFLILFLAL---SLGGIDAAPP----------------------VQSQ
+sp|Q6H321|KLK2_HORSE   M-----------WFLVLCLDL---SLGETGALPP-----------------IQSRIIGGW
+sp|Q91VE3|KLK7_MOUSE   M------GV---WLLSLITVL---LSLALETAG------------------QGERIIDGY
+sp|Q9Y5K2|KLK4_HUMAN   MATAGNPWG---WFL-GYLIL---GVAGSLVSG------------------SCSQIINGE
+sp|P29786|TRY3_AEDAE   M---NQFL----FVSFCALLDSAK-----VSAA----------------TLSSGRIVGGF
+sp|P35037|TRY3_ANOGA   M--ISNKI----AIL-LAVLVVAVACAQARVAQQHRSVQALPRFLPRPKYDVGHRIVGGF
+sp|P07338|CTRB1_RAT    M----AF-------LWLVSCF-ALVGATFGCGVP----------TIQPVLTGLSRIVNGE
+                                                                               : . 
+
+sp|O35205|GRAK_MOUSE   EVQPHSRPFMASIQYR----SKHICGGVLIHPQWVLTAAHCYSWFPRGHSPTVVLGAHSL
+sp|Q7YRZ7|GRAA_BOVIN   EVAPHTRRYMALI--K----GLKLCAGALIKENWVLTAAHCDL----KGNPQVILGAHST
+sp|P08884|GRAE_MOUSE   VVKPHSRPYMAFVKSVDIEGNRRYCGGFLVQDDFVLTAAHCRN-----RTMTVTLGAHNI
+sp|Q06606|GRZ2_RAT     ESKPHSRPYMAFIKFYDSNSEPHHCGGFLVAKDIVMTAAHCNG-----RNIKVTLGAHNI
+sp|P21844|MCPT5_MOUSE  ECIPHSRPYMAYLEIVTSENYLSACSGFLIRRNFVLTAAHCAG-----RSITVLLGAHNK
+sp|P03953|CFAD_MOUSE   EAAAHARPYMASVQVN----GTHVCGGTLLDEQWVLSAAHCMDGVTDDDSVQVLLGAHSL
+sp|P00773|ELA1_RAT     EARRNSWPSQISLQYLSGGSWYHTCGGTLIRRNWVMTAAHCVSSQ---MTFRVVVGDHNL
+sp|Q00871|CTRB1_PENVA  EATPHSWPHQAALFIDD----MYFCGGSLISSEWVLTAAHCMDGA---GFVEVVLGAHNI
+sp|P08246|ELNE_HUMAN   RARPHAWPFMVSLQLRG----GHFCGATLIAPNFVMSAAHCVANV-NVRAVRVVLGAHNL
+sp|P20160|CAP7_HUMAN   KARPRQFPFLASIQNQG----RHFCGGALIHARFVMTAASCFQSQ-NPGVSTVVLGAYDL
+sp|P80015|CAP7_PIG     RAQPQEFPFLASIQKQG----RPFCAGALVHPRFVLTAASCFRGK-NSGSASVVLGAYDL
+sp|Q03238|GRAM_RAT     EAVPHSRPYMVSLQNTK----SHMCGGVLVHQKWVLTAAHCLSEP--LQQLKLVFGLHSL
+sp|P00757|KLKB4_MOUSE  VDCENSQPWHVAVYRF----NKYQCGGVLLDRNWVLTAAHCYN-----DKYQVWLGKNNF
+sp|Q6H321|KLK2_HORSE   ECEKHSKPWQVAVYHQ----GHFQCGGVLVHPQWVLTAAHCMS-----DDYQIWLGRHNL
+sp|Q91VE3|KLK7_MOUSE   KCKEGSHPWQVALLKG----NQLHCGGVLVDKYWVLTAAHCKM-----GQYQVQLGSDKI
+sp|Q9Y5K2|KLK4_HUMAN   DCSPHSQPWQAALVME----NELFCSGVLVHPQWVLSAAHCFQ-----NSYTIGLGLHSL
+sp|P29786|TRY3_AEDAE   QIDIAEVPHQVSLQRSG----RHFCGGSIISPRWVLTRAHCTTNT-DPAAYTIRAGS---
+sp|P35037|TRY3_ANOGA   EIDVSETPYQVSLQYFN----SHRCGGSVLNSKWILTAAHCTVNL-QPSSLAVRLGS---
+sp|P07338|CTRB1_RAT    DAIPGSWPWQVSLQDKT---GFHFCGGSLISEDWVVTAAHCGVKT----SDVVVAGEFDQ
+                                   :           *.. ::    ::: * *           :  *    
+
+sp|O35205|GRAK_MOUSE   SKN-EPM-KQTFEIKKFIPFSRLQSGSA-----------SHDIMLIKLRTAAELNKNVQL
+sp|Q7YRZ7|GRAA_BOVIN   SHK-EKL-DQVFSIKKAIPYPCFDPQTF-----------EGDLQLLQLEGKATMTKAVGI
+sp|P08884|GRAE_MOUSE   KAK-EET-QQIIPVAKAIPHPDYNATAF-----------FSDIMLLKLESKAKRTKAVRP
+sp|Q06606|GRZ2_RAT     KKQ-ENT--QVISVVKAKPHENYDRDSH-----------FNDIMLLKLERKAQLNGVVKT
+sp|P21844|MCPT5_MOUSE  TSK-EDT-WQKLEVEKQFLHPKYDENLV-----------VHDIMLLKLKEKAKLTLGVGT
+sp|P03953|CFAD_MOUSE   SAP-EPY-KRWYDVQSVVPHPGSRPDSL-----------EDDLILFKLSQNASLGPHVRP
+sp|P00773|ELA1_RAT     SQN-DGT-EQYVSVQKIMVHPTWNSNNVA---------AGYDIALLRLAQSVTLNNYVQL
+sp|Q00871|CTRB1_PENVA  RQN-EAS-QVSITSTDFFTHENWNSWLL-----------TNDIALIRLPSPVSLNSNIKT
+sp|P08246|ELNE_HUMAN   SRR-EPT-RQVFAVQRI-FENGYDPVNL-----------LNDIVILQLNGSATINANVQV
+sp|P20160|CAP7_HUMAN   RRR-ERQSRQTFSISSM-SENGYDPQQN-----------LNDLMLLQLDREANLTSSVTI
+sp|P80015|CAP7_PIG     RQQ-EQS-RQTFSIRSI-SQNGYDPRQN-----------LNDVLLLQLDREARLTPSVAL
+sp|Q03238|GRAM_RAT     HDP-QDP-GLTFYIKQAIKHPGYNLK-Y-----------ENDLALLKLDGRVKPSKNVKP
+sp|P00757|KLKB4_MOUSE  LED-EPS-DQHRLVSKAIPHPDFNMSLLNEHTPQPEDDYSNDLMLLRLSKPADITDVVKP
+sp|Q6H321|KLK2_HORSE   SED-EDT-AQFHQVSDSFLDPQFDLSLLKKKYLRPYDDISHDLMLLRLAQPARITDAVKI
+sp|Q91VE3|KLK7_MOUSE   GD---QS-AQKIKATKSFRHPGYSTKT-----------HVNDIMLVRLDEPVKMSSKVEA
+sp|Q9Y5K2|KLK4_HUMAN   EADQEPG-SQMVEASLSVRHPEYNRPL-----------LANDLMLIKLDESVSESDTIRS
+sp|P29786|TRY3_AEDAE   TD-RTNG-GIIVKVKSVIPHPQYNGDTY-----------NYDFSLLELDESIGFSRSIEA
+sp|P35037|TRY3_ANOGA   SR-HASG-GTVVRVARVLEHPNYDDSTI-----------DYDFSLMELESELTFSDVVQP
+sp|P07338|CTRB1_RAT    GSD-EEN-IQVLKIAQVFKNPKFNMFTV-----------RNDITLLKLATPAQFSETVSA
+                                                                *. :..*         :  
+
+sp|O35205|GRAK_MOUSE   LHLGSKN--YLRDGTKCQVTGWGTTKPDLLTASDTLREVTVTIISRKRCNSQSYYNHKPV
+sp|Q7YRZ7|GRAA_BOVIN   LQLPRTED-DVKPHTKCHVAGWGSTKKDACQMSNALREANVTVIDRKICNDAQHYNFNPV
+sp|P08884|GRAE_MOUSE   LKLPRPNA-RVKPGDVCSVAGWGSRSINDTKASARLREAQLVIQEDEECKKRFRHY----
+sp|Q06606|GRZ2_RAT     IALPRSQD-WVKPGQVCTVAGWGRLAN--CTSSNTLQEVNLEVQKGQKCQDMSEDY----
+sp|P21844|MCPT5_MOUSE  LPLSANFN-FIPPGRMCRAVGWGRTNVNE-PASDTLQEVKMRLQEPQACKHFTSFR----
+sp|P03953|CFAD_MOUSE   LPLQYEDK-EVEPGTLCDVAGWGVVTHA-GRRPDVLHQLRVSIMNRTTCNLRTY--HDGV
+sp|P00773|ELA1_RAT     AVLPQEGT-ILANNNPCYITGWGRTRTNG-QLSQTLQQAYLPSVDYSICSSSSY--WGST
+sp|Q00871|CTRB1_PENVA  VKLPSSDV---SVGTTVTPTGWGRPSDSASGISDVLRQVNVPVMTNADCDSVY-----GI
+sp|P08246|ELNE_HUMAN   AQLPAQGR-RLGNGVQCLAMGWGLLGRNR-GIASVLQELNVTVVTS-LCRRS--------
+sp|P20160|CAP7_HUMAN   LPLPLQNA-TVEAGTRCQVAGWGSQRSGG-RLSRFPRFVNVTVTPEDQCRPN--------
+sp|P80015|CAP7_PIG     VPLPPQNA-TVEAGTNCQVAGWGTQRLRR-LFSRFPRVLNVTVTS-NPCLPR--------
+sp|Q03238|GRAM_RAT     LALPRKPRDKPAEGSRCSTAGWGITHQRG-QLAKSLQELDLRLLDTRMCNNSRF--WNGV
+sp|P00757|KLKB4_MOUSE  ITLPTEEP---KLGSTCLASGWGSTTPIKFKYPDDLQCVNLKLLPNEDCDKAHE----MK
+sp|Q6H321|KLK2_HORSE   LDLPTQEP---KLGSTCYTSGWGLISTFTNRGSGTLQCVELRLQSNEKCARAYP----EK
+sp|Q91VE3|KLK7_MOUSE   VQLPEHCE---PPGTSCTVSGWGTTTSPDVTFPSDLMCSDVKLISSRECKKVYK----DL
+sp|Q9Y5K2|KLK4_HUMAN   ISIASQCP---TAGNSCLVSGWGLLANG--RMPTVLQCVNVSVVSEEVCSKLYD----PL
+sp|P29786|TRY3_AEDAE   IALPDASE-TVADGAMCTVSGWGDTKNV-FEMNTLLRAVNVPSYNQAECAAALVNV--VP
+sp|P35037|TRY3_ANOGA   VSLPDQDE-AVEDGTMTIVSGWGNTQSA-AESNAILRAANVPTVNQKECTIAYSSS--GG
+sp|P07338|CTRB1_RAT    VCLPNVDD-DFPPGTVCATTGWGKTKYNALKTPEKLQQAALPIVSEADCKKSWG----SK
+                         :                 ***                 :       *           
+
+sp|O35205|GRAK_MOUSE   ITKDMICAGDARGQKDSCKGDSGGPLIC--K--G--IFHALVSQGYK--CGIAKKPGIYT
+sp|Q7YRZ7|GRAA_BOVIN   IDLSMICAGGRKGEDDSCEGDSGSPLIC--D--N--VFRGVTSFGK---CGNPQKPGIYI
+sp|P08884|GRAE_MOUSE   TETTEICAGDLKKIKTPFKGDSGGPLVC--D--N--KAYGLLAYAK----NRTISSGVFT
+sp|Q06606|GRZ2_RAT     NDSIQLCVGNPSEGKATGKGDSGGPFVC--D--G--VAQGIVSYRL----CTGTLPRVFT
+sp|P21844|MCPT5_MOUSE  -HNSQLCVGNPKKMQNVYKGDSGGPLLC--A--G--IAQGIASYVH----RNAKPPAVFT
+sp|P03953|CFAD_MOUSE   VTINMMCAE--SNRRDTCRGDSGSPLVC--G--D--AVEGVVTWGSR-VCGNGKKPGVYT
+sp|P00773|ELA1_RAT     VKTTMVCAGG-DGVRSGCQGDSGGPLHCLVN--GQYSVHGVTSFVSSMGCNVSKKPTVFT
+sp|Q00871|CTRB1_PENVA  VGDGVVCIDG-TGGKSTCNGDSGGPLNL--N--G--MTYGITSFGSS-AGCEKGYPAAFT
+sp|P08246|ELNE_HUMAN   ----NVCTLVRGRQAGVCFGDSGSPLVC--N--G--LIHGIASFVRG-GCASGLYPDAFA
+sp|P20160|CAP7_HUMAN   ----NVCTGVLTRRGGICNGDGGTPLVC--E--G--LAHGVASFSLG-PCGRG--PDFFT
+sp|P80015|CAP7_PIG     ----DMCIGVFSRRGRISQGDRGTPLVC--N--G--LAQGVASFLRR-RFRRS--SGFFT
+sp|Q03238|GRAM_RAT     LTDSMLCLKAGAKGQAPCKGDSGGPLVC--GK-G--KVDGILSFSSK-NCTDIFKPTVAT
+sp|P00757|KLKB4_MOUSE  VTDAMLCAGEMDGGSYTCEHDSGGPLIC--D--G--ILQGITSWGPE-PCGEPTEPSVYT
+sp|Q6H321|KLK2_HORSE   MTEFVLCATHRDDSGSICLGDSGGALIC--D--G--VFQGITSWGYS-ECADFNDNFVFT
+sp|Q91VE3|KLK7_MOUSE   LGKTMLCAGIPDSKTNTCNGDSGGPLVC--N--D--TLQGLVSWGTY-PCGQPNDPGVYT
+sp|Q9Y5K2|KLK4_HUMAN   YHPSMFCAGGGQDQKDSCNGDSGGPLIC--N--G--YLQGLVSFGKA-PCGQVGVPGVYT
+sp|P29786|TRY3_AEDAE   VTEQMICAGYAAGGKDSCQGDSGGPLVS--G--D--KLVGVVSWGKG--CALPNLPGVYA
+sp|P35037|TRY3_ANOGA   ITDRMLCAGYKRGGKDACQGDSGGPLVV--D--G--KLVGVVSWGFG--CAMPGYPGVYA
+sp|P07338|CTRB1_RAT    ITDVMTCAG--ASGVSSCMGDSGGPLVC--QKDGVWTLAGIVSWGSG-VCST-STPAVYS
+                             *             * * .:       .     .: :                 
+
+sp|O35205|GRAK_MOUSE   LLTKKYQTWIKSKLAPSRAH---------------
+sp|Q7YRZ7|GRAA_BOVIN   LLTKKHLNWIKKTIAGAI-----------------
+sp|P08884|GRAE_MOUSE   KIVH-FLPWISRNMKLL------------------
+sp|Q06606|GRZ2_RAT     RISS-FIPWIQKTMKVLQQS---------------
+sp|P21844|MCPT5_MOUSE  RISH-YRPWINKILREN------------------
+sp|P03953|CFAD_MOUSE   RVSS-YRMWIENITNGNMTS---------------
+sp|P00773|ELA1_RAT     RVSA-YISWMNNVIAYT------------------
+sp|Q00871|CTRB1_PENVA  RVYY-YLDWIQQKTGVTP-----------------
+sp|P08246|ELNE_HUMAN   PVAQ-FVNWIDSIIQRSEDNPCPHPRDPDPASRTH
+sp|P20160|CAP7_HUMAN   RVAL-FRDWIDGVLNNPGPGP----A---------
+sp|P80015|CAP7_PIG     RVAL-FRNWIDSVLNNPP-----------------
+sp|Q03238|GRAM_RAT     AVAP-YSSWIRKVIGRWSPQPL---T---------
+sp|P00757|KLKB4_MOUSE  KLIK-FSSWIRETMANNP-----------------
+sp|Q6H321|KLK2_HORSE   KVMP-HLKWIKETIEKNS-----------------
+sp|Q91VE3|KLK7_MOUSE   QVCK-YKRWVMETMKTHR-----------------
+sp|Q9Y5K2|KLK4_HUMAN   NLCK-FTEWIEKTVQAS------------------
+sp|P29786|TRY3_AEDAE   RVST-VRQWIREVSEV-------------------
+sp|P35037|TRY3_ANOGA   RVAV-VRDWVRENSGA-------------------
+sp|P07338|CTRB1_RAT    RVTA-LMPWVQQILEAN------------------
+                        :      *:                         
+
+
+