JWS-112 Bumping version of T-Coffee to version 11.00.8cbe486.
[jabaws.git] / binaries / src / tcoffee / example / sproteases_small.expresso
diff --git a/binaries/src/tcoffee/example/sproteases_small.expresso b/binaries/src/tcoffee/example/sproteases_small.expresso
new file mode 100644 (file)
index 0000000..a01b526
--- /dev/null
@@ -0,0 +1,130 @@
+CLUSTAL FORMAT for T-COFFEE Version_4.26 [http://www.tcoffee.org], CPU=81.78 sec, SCORE=56, Nseq=19, Len=338 
+
+sp|O35205|GRAK_MOUSE   M-----RFSS--WALV----SLVAGVY----------------MSSECFHTEIIGGREVQ
+sp|Q7YRZ7|GRAA_BOVIN   M-N---IPFPFSFPPAICL-LLIPGVF-------------------PVSCEGIIGGNEVA
+sp|P08884|GRAE_MOUSE   M------------PPVLIL----LTLL----------------LPLGAGAEEIIGGHVVK
+sp|Q06606|GRZ2_RAT     M------------FLFLFF----LVAI----------------LPVNTEGGEIIWGTESK
+sp|P21844|MCPT5_MOUSE  M----------H-LLTLHL----LLLL----------------LGSSTKAGEIIGGTECI
+sp|P03953|CFAD_MOUSE   M-----HSSV--YFVA----LVILGAA----------------VCAAQPRGRILGGQEAA
+sp|P00773|ELA1_RAT     M------LRFLVFASL----VLYGHST----------------QDFPETNARVVGGAEAR
+sp|Q00871|CTRB1_PENVA  M---IGKLSLLLVCVA----VASGNPAAGKPWHWKSPKPLVDPRIHVNATPRIVGGVEAT
+sp|P08246|ELNE_HUMAN   M-TLGRRLACL--FLA----CVLPALL----------------LGGTALASEIVGGRRAR
+sp|P20160|CAP7_HUMAN   M----TRLTVL--ALL----AGLLASS----------------RAGSSPLLDIVGGRKAR
+sp|P80015|CAP7_PIG     ----------------------------------------------------IVGGRRAQ
+sp|Q03238|GRAM_RAT     L------------LLLLAL----KTLW----------------AVGNRFEAQIIGGREAV
+sp|P00757|KLKB4_MOUSE  M-----------WFLILFLALSLGGIDA----------------------APPVQSQVDC
+sp|Q6H321|KLK2_HORSE   M-----------WFLVLCLDLSLGETGA-----------------LPPIQSRIIGGWECE
+sp|Q91VE3|KLK7_MOUSE   M------GV---WLLSLITVLLSLALE------------------TAGQGERIIDGYKCK
+sp|Q9Y5K2|KLK4_HUMAN   MATAGNPWG---WFLG-YLILGVAGSL------------------VSGSCSQIINGEDCS
+sp|P29786|TRY3_AEDAE   M---NQ-FLFVSFCALLDSAKV-SAAT--------------------LSSGRIVGGFQID
+sp|P35037|TRY3_ANOGA   M--ISN-KIAIL-LAVLVVAVACAQARVAQQHRSVQALPRFLPRPKYDVGHRIVGGFEID
+sp|P07338|CTRB1_RAT    M-----AFLWLVSCFA----LVGATFGCGVP----------TIQPVLTGLSRIVNGEDAI
+                                                                            : .    
+
+sp|O35205|GRAK_MOUSE   PHSRPFMASIQYRSK----HICGGVLIHPQWVLTAAHCYSWFPRGHSPTVVLGAHSLSKN
+sp|Q7YRZ7|GRAA_BOVIN   PHTRRYMALIK--GL----KLCAGALIKENWVLTAAHCDL----KGNPQVILGAHSTSHK
+sp|P08884|GRAE_MOUSE   PHSRPYMAFVKSVDIEGNRRYCGGFLVQDDFVLTAAHCRN-----RTMTVTLGAHNIKAK
+sp|Q06606|GRZ2_RAT     PHSRPYMAFIKFYDSNSEPHHCGGFLVAKDIVMTAAHCNG-----RNIKVTLGAHNIKKQ
+sp|P21844|MCPT5_MOUSE  PHSRPYMAYLEIVTSENYLSACSGFLIRRNFVLTAAHCAG-----RSITVLLGAHNKTSK
+sp|P03953|CFAD_MOUSE   AHARPYMASVQVNGT----HVCGGTLLDEQWVLSAAHCMDGVTDDDSVQVLLGAHSLSAP
+sp|P00773|ELA1_RAT     RNSWPSQISLQYLSGGSWYHTCGGTLIRRNWVMTAAHCVSSQ-M--TFRVVVGDHNLSQN
+sp|Q00871|CTRB1_PENVA  PHSWPHQAALFIDD----MYFCGGSLISSEWVLTAAHCMDGA-G--FVEVVLGAHNIRQN
+sp|P08246|ELNE_HUMAN   PHAWPFMVSLQLRG----GHFCGATLIAPNFVMSAAHCVANV-NVRAVRVVLGAHNLSRR
+sp|P20160|CAP7_HUMAN   PRQFPFLASIQNQG----RHFCGGALIHARFVMTAASCFQSQ-NPGVSTVVLGAYDLRRR
+sp|P80015|CAP7_PIG     PQEFPFLASIQKQG----RPFCAGALVHPRFVLTAASCFRGK-NSGSASVVLGAYDLRQQ
+sp|Q03238|GRAM_RAT     PHSRPYMVSLQNTK----SHMCGGVLVHQKWVLTAAHCLSEP--LQQLKLVFGLHSLHDP
+sp|P00757|KLKB4_MOUSE  ENSQPWHVAVYRFNK----YQCGGVLLDRNWVLTAAHCYN-----DKYQVWLGKNNFLED
+sp|Q6H321|KLK2_HORSE   KHSKPWQVAVYHQGH----FQCGGVLVHPQWVLTAAHCMS-----DDYQIWLGRHNLSED
+sp|Q91VE3|KLK7_MOUSE   EGSHPWQVALLKGNQ----LHCGGVLVDKYWVLTAAHCKM-----GQYQVQLGSDKIG--
+sp|Q9Y5K2|KLK4_HUMAN   PHSQPWQAALVMENE----LFCSGVLVHPQWVLSAAHCFQ-----NSYTIGLGLHSLEAD
+sp|P29786|TRY3_AEDAE   IAEVPHQVSLQRSG----RHFCGGSIISPRWVLTRAHCTTNT-DPAAYTIRAGS---TD-
+sp|P35037|TRY3_ANOGA   VSETPYQVSLQYFN----SHRCGGSVLNSKWILTAAHCTVNL-QPSSLAVRLGS---SR-
+sp|P07338|CTRB1_RAT    PGSWPWQVSLQDKT---GFHFCGGSLISEDWVVTAAHCGVK----TSDVVVAGEFDQGSD
+                                :           *.. ::    ::: * *           :  *       
+
+sp|O35205|GRAK_MOUSE   -E-PMKQTFEIKKFIPFSRLQ-----------SGSA--SHDIMLIKLRTAAELNKNVQLL
+sp|Q7YRZ7|GRAA_BOVIN   -E-KLDQVFSIKKAIPYPCFD-----------PQTF--EGDLQLLQLEGKATMTKAVGIL
+sp|P08884|GRAE_MOUSE   -E-ETQQIIPVAKAIPHPDYN-----------ATAF--FSDIMLLKLESKAKRTKAVRPL
+sp|Q06606|GRZ2_RAT     -E-NTQ-VISVVKAKPHENYD-----------RDSH--FNDIMLLKLERKAQLNGVVKTI
+sp|P21844|MCPT5_MOUSE  -E-DTWQKLEVEKQFLHPKYD-----------ENLV--VHDIMLLKLKEKAKLTLGVGTL
+sp|P03953|CFAD_MOUSE   -E-PYKRWYDVQSVVPHPGSR-----------PDSL--EDDLILFKLSQNASLGPHVRPL
+sp|P00773|ELA1_RAT     -D-GTEQYVSVQKIMVHPTWN-----------SNNVAAGYDIALLRLAQSVTLNNYVQLA
+sp|Q00871|CTRB1_PENVA  -E-ASQVSITSTDFFTHENWN-----------SWLL--TNDIALIRLPSPVSLNSNIKTV
+sp|P08246|ELNE_HUMAN   -E-PTRQVFAVQRIFEN-GYD-----------PVNL--LNDIVILQLNGSATINANVQVA
+sp|P20160|CAP7_HUMAN   -ERQSRQTFSISSMSEN-GYD-----------PQQN--LNDLMLLQLDREANLTSSVTIL
+sp|P80015|CAP7_PIG     -E-QSRQTFSIRSISQN-GYD-----------PRQN--LNDVLLLQLDREARLTPSVALV
+sp|Q03238|GRAM_RAT     -QD-PGLTFYIKQAIKHPGYN-----------L-KY--ENDLALLKLDGRVKPSKNVKPL
+sp|P00757|KLKB4_MOUSE  -E-PSDQHRLVSKAIPHPDFNMSLLNEHTPQPEDDY--SNDLMLLRLSKPADITDVVKPI
+sp|Q6H321|KLK2_HORSE   -E-DTAQFHQVSDSFLDPQFDLSLLKKKYLRPYDDI--SHDLMLLRLAQPARITDAVKIL
+sp|Q91VE3|KLK7_MOUSE   -D-QSAQKIKATKSFRHPGYS-----------TKTH--VNDIMLVRLDEPVKMSSKVEAV
+sp|Q9Y5K2|KLK4_HUMAN   QE-PGSQMVEASLSVRHPEYN-----------RPLL--ANDLMLIKLDESVSESDTIRSI
+sp|P29786|TRY3_AEDAE   RT-NGGIIVKVKSVIPHPQYN-----------GDTY--NYDFSLLELDESIGFSRSIEAI
+sp|P35037|TRY3_ANOGA   HA-SGGTVVRVARVLEHPNYD-----------DSTI--DYDFSLMELESELTFSDVVQPV
+sp|P07338|CTRB1_RAT    -E-ENIQVLKIAQVFKNPKFN-----------MFTV--RNDITLLKLATPAQFSETVSAV
+                                                               *. :..*         :   
+
+sp|O35205|GRAK_MOUSE   HLGSK-N-YLRDGTKCQVTGWGTTKP-DLLTASDTLREVTVTIISRKRCNSQSYYNHKPV
+sp|Q7YRZ7|GRAA_BOVIN   QLPRTED-DVKPHTKCHVAGWGSTKK-DACQMSNALREANVTVIDRKICNDAQHYNFNPV
+sp|P08884|GRAE_MOUSE   KLPRPNA-RVKPGDVCSVAGWGSRSINDT-KASARLREAQLVIQEDEECKKR--FR--HY
+sp|Q06606|GRZ2_RAT     ALPRSQD-WVKPGQVCTVAGWGRL--ANC-TSSNTLQEVNLEVQKGQKCQDM--SE--DY
+sp|P21844|MCPT5_MOUSE  PLSANFN-FIPPGRMCRAVGWGRTNV-NE-PASDTLQEVKMRLQEPQACKH---FT--SF
+sp|P03953|CFAD_MOUSE   PLQYEDK-EVEPGTLCDVAGWGVVTH--AGRRPDVLHQLRVSIMNRTTCNLRTYHD--GV
+sp|P00773|ELA1_RAT     VLPQEGT-ILANNNPCYITGWGRTRT--NGQLSQTLQQAYLPSVDYSICSSSSYWG--ST
+sp|Q00871|CTRB1_PENVA  KLPS--S-DVSVGTTVTPTGWGRPSD-SASGISDVLRQVNVPVMTNADCDS--VYG---I
+sp|P08246|ELNE_HUMAN   QLPAQGR-RLGNGVQCLAMGWGLLGR-N-RGIASVLQELNVTVVTS-LCR----------
+sp|P20160|CAP7_HUMAN   PLPLQNA-TVEAGTRCQVAGWGSQRS-G-GRLSRFPRFVNVTVTPEDQCR----------
+sp|P80015|CAP7_PIG     PLPPQNA-TVEAGTNCQVAGWGTQRL-R-RLFSRFPRVLNVTVT-SNPCL----------
+sp|Q03238|GRAM_RAT     ALPRKPRDKPAEGSRCSTAGWGITHQ-R-GQLAKSLQELDLRLLDTRMCNNSRFWN--GV
+sp|P00757|KLKB4_MOUSE  TLPTEE---PKLGSTCLASGWGSTTP-IKFKYPDDLQCVNLKLLPNEDCDKA--HE--MK
+sp|Q6H321|KLK2_HORSE   DLPTQE---PKLGSTCYTSGWGLIST-FTNRGSGTLQCVELRLQSNEKCARA--YP--EK
+sp|Q91VE3|KLK7_MOUSE   QLPEHC---EPPGTSCTVSGWGTTTS-PDVTFPSDLMCSDVKLISSRECKKV--YK--DL
+sp|Q9Y5K2|KLK4_HUMAN   SIASQC---PTAGNSCLVSGWGLLAN-G--RMPTVLQCVNVSVVSEEVCSKL--YD--PL
+sp|P29786|TRY3_AEDAE   ALPDASE-TVADGAMCTVSGWGDTKN--VFEMNTLLRAVNVPSYNQAECAAAL--VNVVP
+sp|P35037|TRY3_ANOGA   SLPDQDE-AVEDGTMTIVSGWGNTQS--AAESNAILRAANVPTVNQKECTIAY--SSSGG
+sp|P07338|CTRB1_RAT    CLPNVDD-DFPPGTVCATTGWGKTKY-NALKTPEKLQQAALPIVSEADCKKS--WG--SK
+                        :                 ***                  :       *           
+
+sp|O35205|GRAK_MOUSE   ITKDMICAGDARGQKDSCKGDSGGPLICK----GIFHALVSQGY-K-CGIAKKPGIYTLL
+sp|Q7YRZ7|GRAA_BOVIN   IDLSMICAGGRKGEDDSCEGDSGSPLICD----NVFRGVTSFGK---CGNPQKPGIYILL
+sp|P08884|GRAE_MOUSE   TETTEICAGDLKKIKTPFKGDSGGPLVCD----NKAYGLLAYAK-N-R--TISSGVFTKI
+sp|Q06606|GRZ2_RAT     NDSIQLCVGNPSEGKATGKGDSGGPFVCD----GVAQGIVSYRL-C-T--GTLPRVFTRI
+sp|P21844|MCPT5_MOUSE  RHNSQLCVGNPKKMQNVYKGDSGGPLLCA----GIAQGIASYVH-R-N--AKPPAVFTRI
+sp|P03953|CFAD_MOUSE   VTINMMCAES--NRRDTCRGDSGSPLVCG----DAVEGVVTWGS-RVCGNGKKPGVYTRV
+sp|P00773|ELA1_RAT     VKTTMVCAGGDG-VRSGCQGDSGGPLHCLVNGQYSVHGVTSFVSSMGCNVSKKPTVFTRV
+sp|Q00871|CTRB1_PENVA  VGDGVVCIDGTG-GKSTCNGDSGGPLNLN----GMTYGITSFGSSAGCE-KGYPAAFTRV
+sp|P08246|ELNE_HUMAN   --RSNVCTLVRGRQAGVCFGDSGSPLVCN----GLIHGIASFVR-GGCASGLYPDAFAPV
+sp|P20160|CAP7_HUMAN   --PNNVCTGVLTRRGGICNGDGGTPLVCE----GLAHGVASFSL-GPCGR--GPDFFTRV
+sp|P80015|CAP7_PIG     --PRDMCIGVFSRRGRISQGDRGTPLVCN----GLAQGVASFLR-RRFRR--SSGFFTRV
+sp|Q03238|GRAM_RAT     LTDSMLCLKAGAKGQAPCKGDSGGPLVCG---KGKVDGILSFSS-KNCTDIFKPTVATAV
+sp|P00757|KLKB4_MOUSE  VTDAMLCAGEMDGGSYTCEHDSGGPLICD----GILQGITSWGP-EPCGEPTEPSVYTKL
+sp|Q6H321|KLK2_HORSE   MTEFVLCATHRDDSGSICLGDSGGALICD----GVFQGITSWGY-SECADFNDNFVFTKV
+sp|Q91VE3|KLK7_MOUSE   LGKTMLCAGIPDSKTNTCNGDSGGPLVCN----DTLQGLVSWGT-YPCGQPNDPGVYTQV
+sp|Q9Y5K2|KLK4_HUMAN   YHPSMFCAGGGQDQKDSCNGDSGGPLICN----GYLQGLVSFGK-APCGQVGVPGVYTNL
+sp|P29786|TRY3_AEDAE   VTEQMICAGYAAGGKDSCQGDSGGPLVSG----DKLVGVVSWGKG--CALPNLPGVYARV
+sp|P35037|TRY3_ANOGA   ITDRMLCAGYKRGGKDACQGDSGGPLVVD----GKLVGVVSWGFG--CAMPGYPGVYARV
+sp|P07338|CTRB1_RAT    ITDVMTCAGAS--GVSSCMGDSGGPLVCQKDGVWTLAGIVSWGS-GVCST-STPAVYSRV
+                             *             * * .:           .: :                  :
+
+sp|O35205|GRAK_MOUSE   TKKYQTWIKSKLA----PSRA----H------------
+sp|Q7YRZ7|GRAA_BOVIN   TKKHLNWIKKTIA----GAI------------------
+sp|P08884|GRAE_MOUSE   VH-FLPWISRNMK----LL-------------------
+sp|Q06606|GRZ2_RAT     SS-FIPWIQKTMKVL--QQS------------------
+sp|P21844|MCPT5_MOUSE  SH-YRPWINKILR----EN-------------------
+sp|P03953|CFAD_MOUSE   SS-YRMWIENITNGNMTS--------------------
+sp|P00773|ELA1_RAT     SA-YISWMNNVIA----YT-------------------
+sp|Q00871|CTRB1_PENVA  YY-YLDWIQQKTG----VTP------------------
+sp|P08246|ELNE_HUMAN   AQ-FVNWIDSIIQ----RSEDNPCPHP-RDPDPASRTH
+sp|P20160|CAP7_HUMAN   AL-FRDWIDGVLN----NPGP----GP-A---------
+sp|P80015|CAP7_PIG     AL-FRNWIDSVLN----NPP------------------
+sp|Q03238|GRAM_RAT     AP-YSSWIRKVIGRW----SP----QPLT---------
+sp|P00757|KLKB4_MOUSE  IK-FSSWIRETMA----NNP------------------
+sp|Q6H321|KLK2_HORSE   MP-HLKWIKETIE----KNS------------------
+sp|Q91VE3|KLK7_MOUSE   CK-YKRWVMETMK----THR------------------
+sp|Q9Y5K2|KLK4_HUMAN   CK-FTEWIEKTVQ----AS-------------------
+sp|P29786|TRY3_AEDAE   ST-VRQWIREVSEV------------------------
+sp|P35037|TRY3_ANOGA   AV-VRDWVRENSGA------------------------
+sp|P07338|CTRB1_RAT    TA-LMPWVQQILE----AN-------------------
+                             *:                              
+
+
+