JWS-112 Bumping version of T-Coffee to version 11.00.8cbe486.

[jabaws.git] / binaries / src / tcoffee / example / sv.maln

diff --git a/binaries/src/tcoffee/example/sv.maln b/binaries/src/tcoffee/example/sv.maln
new file mode 100644 (file)
index 0000000..c6d620b
--- /dev/null
+++ b/binaries/src/tcoffee/example/sv.maln
@@ -0,0 +1,61 @@
+CLUSTAL W (3.6) multiple sequence alignment
+
+
+Q8CAN2_MOUSE      MAAGGRGLIRALHSSPCPTWKRAQSGANGRLKPEYDAVVIGAGHNGLVAAAYLQRLGVNT
+Q9D630_MOUSE      MAAGGRGLIRALHSSPCPTWKRAQSGANGRLKPEYDAVVIGAGHNGLVAAAYLQRLGVNT
+CJ033_MOUSE       ----MKRLVLAI-------------------DPLLDAAPVDT--TAFHHGSLLQRLGA--
+CJ033_HUMAN       MAASGRGLCKAVAASPFPAWRRDNTEARGGLKPEYDAVVIGAGHNGLVAAAYLQRLGVNT
+                       . *  *:                   .*  **. :.:  ..:  .: *****.
+
+Q8CAN2_MOUSE      AVFERRHVIGGAAVTEEIIPGFKFSRASYLLSLLRPQICTDLELK---------------
+Q9D630_MOUSE      AVFERRHVIGGARVTEEIIPGFKFSRASYLLSLLRPQICTDLELKKHGLKLHLRDPYSFT
+CJ033_MOUSE       ------------------------------LSTLKP------------------------
+CJ033_HUMAN       AVFERRHVIGGAAVTEEIIPGFKFSRASYLLSLLRPQIYTDLELKKHGLRLHLRNPYSFT
+                                                ** *.*
+
+Q8CAN2_MOUSE      -------VDRLAWP----------------------------------------------
+Q9D630_MOUSE      PMLEEGTLNRLPRSLLLGTDMAANQKEISQFSRKDAQV----------------------
+CJ033_MOUSE       ------------------------------------------------------------
+CJ033_HUMAN       PMLEEGAGSKVPRCLLLGTDMAENQKQIAQFSQKDAQVFPKYEEFMHRLALAIDPLLDAA
+
+
+Q8CAN2_MOUSE      ------------------------------------------------------------
+Q9D630_MOUSE      ----------------------------GKVSGD--------------------------
+CJ033_MOUSE       ------------------------LLKAGRTLGAQLPQYCEVLTAPISKVLDQWFESEPL
+CJ033_HUMAN       PVDMAAFQHGSLLQRMRSLSTLKPLLKAGRILGAQLPRYYEVLTAPITKVLDQWFESEPL
+
+
+Q8CAN2_MOUSE      -------------------------------------GGW--------------------
+Q9D630_MOUSE      ------------------------------------------------------------
+CJ033_MOUSE       KATLATDAVIGAMTSPHTPGSGYVLLHHVMGSLEGTQGAWSYVQGGMGALSDAIASSAAT
+CJ033_HUMAN       KATLATDAVIGAMTSPHTPGSGYVLLHHVMGGLEGMQGAWGYVQGGMGALSDAIASSATT
+
+
+Q8CAN2_MOUSE      ------------------------------------------------------------
+Q9D630_MOUSE      ------------------------------------------------------------
+CJ033_MOUSE       RGASIFTEKTVAKVQVNSEGRVQGVTLQDGEEVRSRVVLSCASPQVTFLELTPQEWLPGA
+CJ033_HUMAN       HGASIFTEKTVAKVQVNSEGCVQGVVLEDGTEVRSKMVLSNTSPQITFLKLTPQEWLPEE
+
+
+Q8CAN2_MOUSE      ------------------------------------------------------------
+Q9D630_MOUSE      ------------------------------------------------------------
+CJ033_MOUSE       FVKRISQLDTQSPVTKINVAVDRLPNFQAAPNAPGDQPQGHHQCSIHLNCEDTLLLHQAF
+CJ033_HUMAN       FLERISQLDTRSPVTKINVAVDRLPSFLAAPNAPRGQPLPHHQCSIHLNCEDTLLLHQAF
+
+
+Q8CAN2_MOUSE      ------------------------------------------------------------
+Q9D630_MOUSE      ------------------------------------------------------------
+CJ033_MOUSE       EDAKGGLPSQKPMIELCIPSSLDPTLAPPGCHVVSLFTQYTPYTLAGGKVWNEQEKNTYA
+CJ033_HUMAN       EDAMDGLPSHRPVIELCIPSSLDPTLAPPGCHVVSLFTQYMPYTLAGGKAWDEQERDAYA
+
+
+Q8CAN2_MOUSE      ------------------------------------------------------------
+Q9D630_MOUSE      ------------------------------------------------------------
+CJ033_MOUSE       DKVFDCIEAYAPGFKRSVLARDILTPPDLERIFRLPGGNIFHGAMSLDQLYFARPVPQHS
+CJ033_HUMAN       DRVFDCIEVYAPGFKDSVVGRDILTPPDLERIFGLPGGNIFHCAMSLDQLYFARPVPLHS
+
+
+Q8CAN2_MOUSE      -----------------------------------------
+Q9D630_MOUSE      -----------------------------------------
+CJ033_MOUSE       DYRCPVQGLYLCGSGAHPGGGVMGAAGRNAAHVVFRDLKNM
+CJ033_HUMAN       GYRCPLQGLYLCGSGAHPGGGVMGAAGRNAAHVAFRDLKSM
\ No newline at end of file