JWS-112 Bumping version of T-Coffee to version 11.00.8cbe486.

[jabaws.git] / binaries / src / tcoffee / example / three_pdb_two_seq.aln

diff --git a/binaries/src/tcoffee/example/three_pdb_two_seq.aln b/binaries/src/tcoffee/example/three_pdb_two_seq.aln
new file mode 100644 (file)
index 0000000..f18bf6f
--- /dev/null
+++ b/binaries/src/tcoffee/example/three_pdb_two_seq.aln
@@ -0,0 +1,39 @@
+CLUSTAL FORMAT for T-COFFEE Version_4.32 [http://www.tcoffee.org], CPU=1.36 sec, SCORE=80, Nseq=5, Len=270 
+
+1FI8B                  ----------------------IIGGHEAKPHSRPYMAYLQIMY---GSKKCGGFLIRED
+1NN6A                  ------------------------GGTECKPHSRPYMAYLEIVTSNGPSKFCGGFLIRRN
+1PPGE                  ----------------------IVGGRRARPHAWPFMVSLQLR----GGHFCGATLIAPN
+sp|Q7JIG6|KLK15_SAGOE  --MWLLLPLSFLLTSTAQDGGKLLEGEECAPHSQPWQVALY----ERGRFNCGASLISPH
+sp|P35034|TRYP_PLEPL   MRLLALLLMVGAAVAVPREDGRIIGGHECAAHSRPFMASL-----NYGYHFCGGVLINNQ
+                                                * .. .*: *: . *           **. **  .
+
+1FI8B                  FVLTAAHCSG--SKIQV-LGAHNIKEQEKMQQIIPVVKIIPHPAYNSKTISNDIMLLKLK
+1NN6A                  FVLTAAHCAG--RSITVTLGAHNITEEEDTWQKLEVIKQFRHPKYNTSTLHHDIMLLKLK
+1PPGE                  FVMSAAHCVAN-VNVRVVLGAHNLSRREPTRQVFAVQRIFEN-GYDPVNLLNDIVILQLN
+sp|Q7JIG6|KLK15_SAGOE  WVLSAAHCQS--RFMRVRLGEHNLRKRDGPEQLRTASRVIPHPRYEARSHRHDIMLLRLV
+sp|P35034|TRYP_PLEPL   WVLSVAHCWYNPYAMQVMLGEHDLRKFEGTEQLMKTDTIIWHPNYDYQTLDLTSCSSSST
+                       :*::.***      : * ** *:: . :   *   .   : :  *:  .           
+
+1FI8B                  SKAKRSSAVKPLNLPRRNVKVKPGDVCYVAGWGKLGPMGK-----------YSDTLQEVE
+1NN6A                  EKASLTLAVGTLPFPSQFNFVPPGRMCRVAGWGRTGVLKP-----------GSDTLQEVK
+1PPGE                  GSATINANVQVAQLPAQGRRLGNGVQCLAMGWGLLGRNRG-----------IASVLQELN
+sp|Q7JIG6|KLK15_SAGOE  QPARLTPQVRPVVLPTRCPH--PGEACVVSGWGLVSHNEPGTTGRPQSQVSLPDTLHCAN
+sp|P35034|TRYP_PLEPL   ILWKVTHAVAPIPLPTSCPVA--GTPCSVSGWGNTARDG--------DEVYLPTLLQCMD
+                            .  *    :*        *  * . ***  .                .  *:  .
+
+1FI8B                  LTVQEDQKCESLKNYFDKANEICAD--PKIRAS--FRGDSGGPLVCKKVAAGIVSYGQ--
+1NN6A                  LRLMDPQACSHF-RDFDHNLQLCVG--NPRKTA--FKGDSGGPLLCAGVAQGIVSYGR--
+1PPGE                  VTVVTSL---------CRRSNVCTL--VRQAGV--CFGDSGSPLVCNGLIHGIASFVR--
+sp|Q7JIG6|KLK15_SAGOE  ISIISDASCDKNYPGRLTNTMVCAG--AEGRGAESCEGDSGGPLVCGGILQGIVSWGDVP
+sp|P35034|TRYP_PLEPL   VPIVDEEQCMKSYPDMISPRMVCAGFMDGSR--DACNGDSGSPLVCRGEVYGLVSWGQ--
+                       : :                  :*.             ****.**:*     *:.*:    
+
+1FI8B                  -NDGST--PRAFTKVSTFLSWIKKTMKK--
+1NN6A                  -SDAKP--PAVFTRISHYRPWINQILQAN-
+1PPGE                  -GGCSGLYPDAFAPVAQFVNWIDSIIQ---
+sp|Q7JIG6|KLK15_SAGOE  CDNT--TKPGVYTKVCRYVKWIRETMKRN-
+sp|P35034|TRYP_PLEPL   -GCAQPNYPGVYVKLCEFLGWIERTLEAYP
+                        .      * .:. :. :  **   ::   
+
+
+