+++ /dev/null
-#include <stdio.h>
-#include <stdlib.h>
-#include <ctype.h>
-#include <string.h>
-#include <ctype.h>
-#include <stdlib.h>
-#include "io_lib_header.h"
-#include "util_lib_header.h"
-#include "define_header.h"
-#include "matrices.h"
-
-#define DEFAULT_COLOR -1
-#define GAP_COLOR -2
-#define INK_COLOR -3
-
-Sequence * cw_read_sequences ( char *seq_name)
- {
- Sequence *S;
-
-
- char **seq=NULL;
- char **name=NULL;
- int *len=NULL;
- int nseq=0;
- int min_len=0;
- int max_len=0;
- int a;
-
- get_sequence ( seq_name, &nseq, &seq, &name, &len, &min_len, &max_len);
-
- S=declare_sequence ( min_len, max_len, nseq);
- for ( a=0; a< nseq; a++)sprintf ( S->file[a], "%s", seq_name);
-
- for ( a=0; a<S->nseq; a++)
- {
- S->len[a]=len[a];
- sprintf ( S->name[a],"%s", name[a]);
- vfree ( name[a]);
- sprintf ( S->seq[a], "%s", seq[a]);
- vfree ( seq[a]);
- }
- vfree (seq);
- vfree (name);
- vfree (len);
- S=get_sequence_type ( S);
- return S;
- }
-char * get_string_type (char *S)
- {
- int a, l;
- int protein=0, dna=0,rna=0, tot=0;
- char *type;
- static char *ltype;
- static int warning;
-
- if ( !ltype)
- declare_name(ltype);
-
- declare_name(type);
- l=(int)strlen (S);
-
- if (l==0)
- {
- sprintf ( type, "UNKNOWN");
- return type;
- }
-
- for ( a=0; a<l; a++)
- {
- if ( !is_gap(S[a]))
- {
- protein+=( is_aa (S[a]) && !is_dna(S[a]));
- dna+= ( is_dna(S[a]));
- rna+= ( is_rna(S[a]));
- tot++;
- }
- }
-
- protein=(protein*100)/tot;
- dna=(dna*100)/tot;
- rna=(rna*100)/tot;
-
- if ( l<20 && warning==0)
- {
- /*add_warning ( stderr, "WARNING: short sequences, use -type=DNA or PROTEIN");*/
- warning=1;
- }
- if ( l<20 && ltype && ltype[0])
- {
- if (dna==100)
- {
- sprintf ( type, "%s", ltype);
- ltype[0]='\0';
- }
- else
- sprintf ( type, "PROTEIN");
-
- }
- else if ( dna>98 && rna>10)sprintf ( type, "RNA");
- else if ( dna>98)sprintf ( type, "DNA");
- else sprintf ( type, "PROTEIN");
-
- sprintf ( ltype, "%s", type);
- return type;
- }
-
-Alignment* get_aln_type (Alignment *A)
- {
- if ( !A) return A;
-
- if ( A->S && !(A->S)->type)(A->S)->type=vcalloc (30, sizeof (char));
-
- if ( A->S && (A->S)->type[0]!='\0')
- {
- ;
- }
- else if (A->S!=NULL && (A->S)->type[0]=='\0')
- {
- A->S=get_sequence_type (A->S);
- }
- else if (A->S==NULL)
- {
- A->S=aln2seq (A);
- A->S=get_sequence_type(A->S);
- }
- return A;
- }
-
-
-
-char *unset_mode ()
-{
- return set_mode (UNSET, NULL);
-}
-char *store_mode (char *val)
-{
- return set_mode (SET, val);
-}
-char *retrieve_mode ()
-{
- return set_mode (GET,NULL);
-}
-char *set_mode (int mode, char *val)
-{
- static char type[100];
- if (mode==SET)
- {
- if (!val)printf_exit (EXIT_FAILURE, stderr, "Error: programme mode unset in io_func.c:set_seq_type");
- sprintf ( type,"%s", val);
- }
- else if ( mode==GET)
- {
- ;
- }
- else if ( mode==UNSET)
- {
- type[0]='\0';
- }
- else
- {
- printf_exit (EXIT_FAILURE, stderr, "Error: unknown mode in function io_func.c:set_seq_type, use SET, GET or UNSET");
- }
- return type;
-}
-/************************************************************/
-
-
-
-char *unset_seq_type ()
-{
- return set_seq_type (UNSET, NULL);
-}
-char *store_seq_type (char *val)
-{
- return set_seq_type (SET, val);
-}
-char *retrieve_seq_type ()
-{
- return set_seq_type (GET,NULL);
-}
-char *set_seq_type (int mode, char *val)
-{
- static char type[100];
- if (mode==SET)
- {
- if (!val)printf_exit (EXIT_FAILURE, stderr, "Error: sequence type unset in io_func.c:set_seq_type");
- sprintf ( type,"%s", val);
- }
- else if ( mode==GET)
- {
- ;
- }
- else if ( mode==UNSET)
- {
- type[0]='\0';
- }
- else
- {
- printf_exit (EXIT_FAILURE, stderr, "Error: unknown mode in function io_func.c:set_seq_type, use SET, GET or UNSET");
- }
- return type;
-}
-char * get_array_type (int n, char **seq)
-{
- char *buf, *buf2;
- int a, tot=0;
- buf2=vcalloc ( 100, sizeof (char));
-
-
- for ( tot=0,a=0; a<n; a++)tot+=strlen (seq[a]);
- buf=vcalloc (tot+1, sizeof (char));
- for ( a=0; a<n; a++)strcat (buf, seq[a]);
- sprintf ( buf2, "%s", get_string_type(buf));
- vfree (buf);
- return buf2;
-}
-Sequence *get_sequence_type (Sequence *S)
-{
- if ( !S) return NULL;
- else sprintf ( S->type, "%s", get_array_type (S->nseq, S->seq));
- return S;
-}
-
-
-void get_sequence (char *seq_file,int *NSEQ, char ***SEQ, char ***SN, int **sl, int *min, int *max)
- {
- int a,b;
- int min_len;
- int max_len;
- int nseq;
-
- int **SL;
-
- nseq=NSEQ[0]= readseqs ( seq_file, SEQ, SN, &SL);
- sl[0]=vcalloc ( nseq, sizeof (int));
-
-
- min_len= max_len= (SL)[0][0];
- for ( a=0; a<NSEQ[0]; a++)
- {
- sl[0][a]=SL[a][0];
- for ( b=0; b<(SL)[a][0]; b++)
- (SEQ[0])[a][b]=tolower ((SEQ[0])[a][b]);
- }
- for ( a=1; a<NSEQ[0]; a++)
- {
- min_len= ( min_len > (SL)[a][0])?(SL)[a][0]:min_len;
- max_len= ( max_len < (SL)[a][0])?(SL)[a][0]:max_len;
- }
- min[0]=min_len;
- max[0]=max_len;
- }
-
-int ** get_matrix ( char *name, char *format)
- {
-
- if ( strm ( "blast", format))return read_blast_matrix ( name);
- else if ( strm ( "clustalw", format))return read_matrice(name);
- else
- {
- fprintf ( stderr, "\nError:\nUnknowm Format %s for Matrix %s[FATAL]", format, name);
- myexit (EXIT_FAILURE);
- }
- return NULL;
- }
-void display_matrix (int **mat);
-int ** read_matrice (char *mat_name_in)
- {
- int a,b,c, l;
-
- char AA[]="abcdefghiklmnpqrstvwxyz";
- FILE *fp;
- int **matrice;
- int **matrix2;
- char mat_name[200];
- int *vector=NULL;
-
- l=strlen(AA);
-
-
-
-
- if ( strm2 (mat_name_in, "pam", "PAM"))sprintf ( mat_name, "pam250mt");
- else if (strm2 (mat_name_in, "blosum", "BLOSUM"))sprintf ( mat_name, "blosum62mt");
- else if (strm3 (mat_name_in, "id", "ID", "idmat"))sprintf ( mat_name, "idmat");
- else sprintf ( mat_name, "%s", mat_name_in);
-
- /*Read Header Matrices*/
- if (strm(mat_name, "pam250mt"))vector=pam250mt;
- else if (strm(mat_name, "idmat"))vector=idmat;
- else if (strm(mat_name, "dna_idmat"))vector=idmat;
- else if (strm(mat_name, "est_idmat"))vector=est_idmat;
- else if (strm(mat_name, "md_350mt"))vector=md_350mt;
- else if (strm(mat_name, "md_250mt"))vector=md_250mt;
- else if (strm(mat_name, "md_120mt"))vector=md_120mt;
- else if (strm(mat_name, "md_40mt" ))vector= md_40mt;
- else if (strm(mat_name, "pam350mt" ))vector=pam350mt;
- else if (strm(mat_name, "pam160mt" ))vector=pam160mt;
- else if (strm(mat_name, "pam120mt" ))vector=pam120mt;
-
- else if (strm(mat_name, "blosum80mt" ))vector=blosum80mt;
- else if (strm(mat_name, "blosum62mt" ))vector=blosum62mt;
- else if (strm(mat_name, "exon2mt" ))vector=blosum62mt;
- else if (strm(mat_name, "blosum62mt3" ))vector=blosum62mt3;
-
- else if (strm(mat_name, "blosum62mt2" ))vector=blosum62mt2;
- else if (strm(mat_name, "blosum55mt" ))vector=blosum55mt;
- else if (strm(mat_name, "blosum50mt" ))vector=blosum50mt;
- else if (strm(mat_name, "blosum45mt" ))vector=blosum45mt;
-
- else if (strm(mat_name, "blosum40mt" ))vector=blosum40mt;
- else if (strm(mat_name, "blosum30mt" ))vector=blosum30mt;
- else if (strm(mat_name, "beta_mat" ))vector=beta_mat;
- else if (strm(mat_name, "alpha_mat" ))vector=alpha_mat;
- else if (strm(mat_name, "coil_mat" ))vector=coil_mat;
-
- else if (strm(mat_name, "rblosum80mt" ))vector=rblosum80mt;
- else if (strm(mat_name, "rblosum62mt" ))vector=rblosum62mt;
- else if (strm(mat_name, "rblosum30mt" ))vector=rblosum30mt;
-
- else if (strm(mat_name, "rpam250mt" ))vector=rpam250mt;
- else if (strm(mat_name, "rpam350mt" ))vector=rpam350mt;
- else if (strm(mat_name, "rpam160mt" ))vector=rpam160mt;
- else if (strm(mat_name, "rpam120mt" ))vector=rpam120mt;
-
- else if (strm(mat_name, "tmpam250mt" ))vector=tmpam250mt;
- else if (strm(mat_name, "rtmpam250mt" ))vector=rtmpam250mt;
-
- else if (strm(mat_name, "rbeta_mat" ))vector=rbeta_mat;
- else if (strm(mat_name, "ralpha_mat" ))vector=ralpha_mat;
- else if (strm(mat_name, "rcoil_mat" ))vector=rcoil_mat;
- else if (strm (mat_name, "jtttm250mt"))vector=jtttm250mt;
-
- /*Header Matrices*/
- if(vector)
- {
- matrice=declare_int ( 256, 256);
- for (a=0; a<l; ++a)
- {
- for (b=0;b<=a;++b)
- {
- matrice[a][b]=matrice[b][a]=(vector[(a*a+a)/2+b]);
- }
- }
- }
-
- /*Hard coded Matrices*/
-
- else if ( strm (mat_name, "exon_mt"))
- {
- matrice=declare_int ( 256, 256);
- sprintf (AA, "bojx");
- l=4;
- for ( a=0; a<l-1; a++)
- {
- matrice[a][a]=10;
- for ( b=a+1; b< l-2; b++)
- {
- matrice[a][b]=matrice[b][a]=5;
- }
- }
-
- }
- else if ( strm ( mat_name, "tdamat"))
- {
- int x, y;
- matrice=declare_int ( 256, 256);
- sprintf ( AA, "abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ");
- l=strlen (AA);
- for ( x=0; x<l; x++)
- for ( y=0; y<l; y++)matrice[x][y]=-10;
- for ( x=0; x<l; x++) {matrice[x][x]=0; matrice[x][GAP_CODE]=-3;}
- return matrice;
- }
- /*Blast Matrices*/
- else if ( check_file_exists(mat_name) && is_blast_matrix (mat_name))
- {
-
- matrice=read_blast_matrix ( mat_name);
- return matrice;
- }
- else if ( check_file_exists(mat_name) && is_pavie_matrix (mat_name))
- {
-
- matrice=read_pavie_matrix ( mat_name);
- return matrice;
- }
-
- else if ( check_file_exists(mat_name) && is_clustalw_matrix (mat_name))
- {
-
- fp=vfopen ( mat_name, "r");
- while ( (c=fgetc (fp))!='$' && c!=EOF);
- if ( c==EOF){vfclose (fp);return NULL;};
-
- matrice=declare_int ( 256, 256);
- fgetc(fp);
- for ( a=0; a<l; a++)
- {
- for ( b=0; b<=a; b++)
- if (fscanf ( fp, "%d,", &matrice[a][b])==0){vfclose (fp);free_int (matrice, -1);return NULL;};
- fscanf ( fp, "\n");
- }
- fclose ( fp);
- }
- else {return NULL;}
-
-
- matrix2=declare_int ( 256, 256);
- for ( b=0; b<l; b++)
- for ( c=0; c<l; c++)
- {
-
- matrix2[toupper(AA[b])-'A'][toupper(AA[c])-'A']=matrice[b][c];
- matrix2[toupper(AA[b])-'A'][tolower(AA[c])-'A']=matrice[b][c];
- matrix2[tolower(AA[b])-'A'][toupper(AA[c])-'A']=matrice[b][c];
- matrix2[tolower(AA[b])-'A'][tolower(AA[c])-'A']=matrice[b][c];
- }
- if ( strm ( "exon2mt", mat_name))
- {
- char EE[4];
- int v=(getenv ("EXONVALUE_4_TCOFFEE"))?atoi("EXONVALUE_4_TCOFFEE"):100;
- sprintf (EE, "obj");
- for (a=0; a<strlen (EE); a++)
- {
- matrix2[toupper(EE[a])-'A'][toupper(EE[a])-'A']=v;
- matrix2[tolower(EE[a])-'A'][toupper(EE[a])-'A']=v;
- matrix2[toupper(EE[a])-'A'][tolower(EE[a])-'A']=v;
- matrix2[tolower(EE[a])-'A'][tolower(EE[a])-'A']=v;
- }
- }
-
- /*Correct for RNA: Add the U cost*/
- for (b=0; b<l; b++)
- {
-
- matrix2['U'-'A'][toupper(AA[b])-'A']=matrix2['T'-'A'][toupper(AA[b])-'A'];
- matrix2[toupper(AA[b])-'A']['U'-'A']=matrix2[toupper(AA[b])-'A']['T'-'A'];
- matrix2['U'-'A'][toupper(AA[b])-'A']=matrix2['t'-'A'][tolower(AA[b])-'A'];
- matrix2[tolower(AA[b])-'A']['u'-'A']=matrix2[tolower(AA[b])-'A']['t'-'A'];
-
- }
- matrix2['U'-'A']['U'-'A']=matrix2['T'-'A']['T'-'A'];
- matrix2['u'-'A']['U'-'A']=matrix2['t'-'A']['T'-'A'];
- matrix2['U'-'A']['u'-'A']=matrix2['T'-'A']['t'-'A'];
- matrix2['u'-'A']['u'-'A']=matrix2['t'-'A']['t'-'A'];
-
- free_int (matrice, -1);
- return (matrix2);
-
- }
-
-void display_matrix (int **mat)
-{
- int a, b;
-
- for ( a=0; a< 26; a++)
- {
- fprintf ( stderr, "\n%c ", a+'a');
- for ( b=0; b< 26; b++)
- fprintf ( stderr, " %2d", mat[a][b]);
- }
-}
-
-int **neg_matrix2pos_matrix ( int **matrix)
- {
- int b,c,l, min, max;
- char AA[]="abcdefghiklmnpqrstvwxyzABCDEFGHIKLMNPQRSTVWXYZ";
- l=strlen(AA);
- min=max=matrix[AA[0]-'A'][AA[0]-'A'];
- for ( b=0; b<l; b++)
- for ( c=0; c<l; c++)
- {
- min=(matrix[AA[b]-'A'][AA[c]-'A']<min)?matrix[AA[b]-'A'][AA[c]-'A']:min;
- max=(matrix[AA[b]-'A'][AA[c]-'A']<max)?matrix[AA[b]-'A'][AA[c]-'A']:max;
- }
- if (min>0)return matrix;
- else
- {
- for ( b=0; b<l; b++)
- for ( c=0; c<l; c++)
- {
- matrix[b][c]=matrix[b][c]-min;
- }
- }
- return matrix;
- }
-
-
-
-/*****************************************************************/
-void get_rgb_values ( int val, Color *C)
- {
-
- /*Colors can be modified, see the definition of
- COLOR_FILE in prgogrammes_define.h
- */
-
- static char **html_code;
- static float **ps_code;
- int class, n, c;
- float *r, *g, *b;
- FILE *fp;
-
-
-
- if ( !html_code)
- {
- html_code=declare_char(10, 10);
- ps_code=declare_float (10, 3);
-
- n=0;
- /*0*/
- sprintf (html_code[n], "#6666FF");
- ps_code[n][0]=0.4;
- ps_code[n][1]=0.4;
- ps_code[n][2]=1;
- n++;
- /*1*/
- sprintf (html_code[n], "#00FF00");
- ps_code[n][0]=0.6;
- ps_code[n][1]=1;
- ps_code[n][2]=0;
- n++;
-
- /*2*/
- sprintf (html_code[n], "#66FF00");
- ps_code[n][0]=0.8;
- ps_code[n][1]=1;
- ps_code[n][2]=0;
- n++;
-
- /*3*/
- sprintf (html_code[n], "#CCFF00");
- ps_code[n][0]=1.0;
- ps_code[n][1]=1.0;
- ps_code[n][2]=0;
- n++;
-
- /*4*/
- sprintf (html_code[n], "#FFFF00");
- ps_code[n][0]=1;
- ps_code[n][1]=0.85;
- ps_code[n][2]=0;
- n++;
-
- /*5*/
- sprintf (html_code[n], "#FFCC00");
- ps_code[n][0]=1;
- ps_code[n][1]=0.7;
- ps_code[n][2]=0;
- n++;
-
- /*6*/
- sprintf (html_code[n], "#FF9900");
- ps_code[n][0]=1;
- ps_code[n][1]=0.6;
- ps_code[n][2]=0;
- n++;
-
- /*7*/
- sprintf (html_code[n], "#FF6600");
- ps_code[n][0]=1;
- ps_code[n][1]=0.4;
- ps_code[n][2]=0;
- n++;
-
- /*8*/
- sprintf (html_code[n], "#FF3300");
- ps_code[n][0]=1;
- ps_code[n][1]=0.2;
- ps_code[n][2]=0;
- n++;
-
-
- /*9*/
- sprintf (html_code[n], "#FF2000");
- ps_code[n][0]=1;
- ps_code[n][1]=0;
- ps_code[n][2]=0;
- n++;
-
-
-
-
-
- if ( check_file_exists(COLOR_FILE))
- {
- fp=vfopen( COLOR_FILE, "r");
-
- while ((c=fgetc(fp))!='*');
- while ((c=fgetc(fp))!='\n');
-
- c=0;
- while ((c=fgetc(fp))!=EOF)
- {
- ungetc(c, fp);
- if ( fscanf (fp, "%d", &class)==0)break;
- fscanf (fp, "%s %f %f %f", html_code[class], &ps_code[class][0], &ps_code[class][1],&ps_code[class][2]);
- while ((c=fgetc(fp))!='\n' && c!=EOF);
- if ( c==EOF)ungetc(c, fp);
- }
- vfclose(fp);
- }
- }
-
-
-
- /*Conversions*/
- if ( val==10)val--;
-
- r=&C->r;
- g=&C->g;
- b=&C->b;
-
- if ( val==10)val--;
- sprintf ( C->html_color_class, "value%d",val);
-
-
- if (val<=9 && val>=0)
- {
-
- sprintf ( C->html_color, "%s", html_code[val]);
- r[0]=ps_code[val][0];
- g[0]=ps_code[val][1];
- b[0]=ps_code[val][2];
- }
-
- else if (val==DEFAULT_COLOR || val==NO_COLOR_RESIDUE || val==NO_COLOR_GAP || (val>'A' && val<'z'))
- {
- C->html_color[0]='\0';
- sprintf ( C->html_color_class, "valuedefault");
- r[0]=1.;
- g[0]=1;
- b[0]=1;
-
- }
- else if (val==GAP_COLOR)
- {
- C->html_color[0]='\0';
- sprintf ( C->html_color_class, "valuegap");
- r[0]=1.;
- g[0]=1;
- b[0]=1;
- }
- else if (val==INK_COLOR )
- {
- sprintf ( C->html_color, "000000");
- sprintf ( C->html_color_class, "valueink");
- r[0]=0.;
- g[0]=0;
- b[0]=0;
- }
- return;
-
-
- }
-int output_color_format ( Alignment *B,Alignment *Sin,char *name, \
-FILE_format *(*vfopen_format) ( char *),\
-FILE_format *(*print_format_string) ( char * ,Color *, Color *, FILE_format*),\
-FILE_format *(*print_format_char) ( int ,Color *, Color *, FILE_format*),\
-void (*get_rgb_values_format) ( int ,Color *),\
-FILE_format* (*vfclose_format) ( FILE_format *))
- {
- int a, b, c;
- int max_name_len=15;
- int max_len=0;
- char *buf2, *buf3;
-
- static char *buf;
- int s;
- int *n_residues;
- static FILE_format *fps;
- Color *ink;
- Color *box_c;
- Color *white;
- Alignment *S;
-
-
- S=copy_aln (B, NULL);
-
- buf2=vcalloc (Sin->len_aln+1, sizeof (char));
- buf3=vcalloc ( B->len_aln+1, sizeof (char));
- for ( a=0; a<B->nseq; a++)
- {
- int i,n, r;
-
- i=name_is_in_list ( B->name[a], Sin->name, Sin->nseq, -1);
- if (i==-1)continue;
- sprintf (buf2, "%s", Sin->seq_al[i]);ungap(buf2);
- sprintf (buf3, "%s", S->seq_al[a]);ungap(buf3);
-
- if ( strlen (buf2) !=strlen(buf3))
- {
-
- fprintf ( stderr, "\nERROR: Incompatible cache ON sEQ: %s\n", S->name[a]);
- fprintf ( stderr, "\n%s\n%s", buf2, buf3);
- fprintf ( stderr, "\n\n%s\n%s", Sin->seq_al[i],S->seq_al[a]); exit (EXIT_FAILURE);
- }
-
- for (n=0,b=0;b<B->len_aln; b++)
- {
- r=S->seq_al[a][b];
- if (!is_gap(r))
- {
- S->seq_al[a][b]=buf2[n++];
- }
- }
- }
-
- S=aln2number(S);
- vfree (buf2);
-
- box_c=vcalloc ( 1, sizeof (Color));
- get_rgb_values_format (DEFAULT_COLOR, (white=vcalloc ( 1, sizeof (Color))));
- get_rgb_values_format (INK_COLOR, (ink =vcalloc ( 1, sizeof (Color))));
-
- n_residues=vcalloc ( B->nseq+1, sizeof (int));
- for ( a=0; a<B->nseq; a++)n_residues[a]=B->order[a][1];
-
- fps=vfopen_format( name);
- if ( buf==NULL)
- {
- buf=vcalloc (10000, sizeof (int));
- }
-
- if ( max_len==0)
- {
- for ( a=0; a< B->nseq; a++)
- {if ( strlen (B->name[a])>max_len)
- max_len= strlen ( (B->name[a]));
- }
- }
- if ( max_len>max_name_len)max_len=max_name_len;
-
- sprintf (buf, "\n%s, %s(%s)\n%s\n",PROGRAM,VERSION,DATE, AUTHOR);
- fps=print_format_string ( buf,white, ink, fps);
-
- fps=print_format_string ( "\n\n",white,ink, fps);
-
- fps->line-=max_len;
- fps->line=fps->line-fps->line%3;
-
-
-
-
- for (a=0; a<B->len_aln; a+=fps->line)
- {
-
- if ( (fps->n_line+(B->nseq+4))>fps->max_line_ppage && !((B->nseq+4)>fps->max_line_ppage))
- {
- fps=print_format_char ( fps->eop,white, ink, fps);
- }
-
- for (b=0; b<=B->nseq; b++)
- {
- sprintf (buf,"%-*.*s ",max_len+2, max_len,(b==B->nseq)?"":S->name[b]);
- fps=print_format_string ( buf,white, ink, fps);
- if(B->output_res_num)
- {
- sprintf (buf, " %4d ", n_residues[b]+1);
- fps=print_format_string ( buf,white, ink, fps);
- }
-
- for (fps->in_seq=1,c=a;c<a+fps->line && c<B->len_aln;c++)
- {
- if (b==B->nseq)
- {
- n_residues[b]++;
- get_rgb_values_format (DEFAULT_COLOR,box_c);
- s=analyse_aln_column ( B, c);
- }
- else
- {
- n_residues[b]+=!is_gap(B->seq_al[b][c]);
- s=B->seq_al[b][c];
- if (!is_gap(s) && S->seq_al[b][c]!=NO_COLOR_RESIDUE )
- {
- get_rgb_values_format ( S->seq_al[b][c], box_c);
- }
- else
- {
- get_rgb_values_format (GAP_COLOR, box_c);
- }
- }
- fps=print_format_char ( s,box_c, ink,fps);
- }
- fps->in_seq=0;
-
- if(B->output_res_num)
- {
- sprintf (buf, " %4d ", n_residues[b]);
- fps=print_format_string ( buf,white, ink, fps);
- }
-
- fps=print_format_char ( '\n', white, ink, fps);
-
- }
- fps=print_format_string ( "\n\n",white, ink, fps);
- }
- fps=print_format_string ( "\n\n\n",white, ink,fps);
-
-
- vfclose_format( fps);
- free_aln (S);
- vfree (n_residues);
- return 1;
-
- }
-
-int output_reliability_format ( Alignment *B,Alignment *S,char *name, \
-FILE_format *(*vfopen_format) ( char *),\
-FILE_format *(*print_format_string) ( char * ,Color *, Color *, FILE_format*),\
-FILE_format *(*print_format_char) ( int ,Color *, Color *, FILE_format*),\
-void (*get_rgb_values_format) ( int ,Color *),\
-FILE_format* (*vfclose_format) ( FILE_format *))
- {
- int a, b, c,l;
- int max_name_len=15;
- int max_len=0;
- static char *buf,*buf2;
- int s;
- static FILE_format *fps;
- Color *ink;
- Color *box_c;
- Color *white;
- int *n_residues;
-
-
- box_c=vcalloc ( 1, sizeof (Color));
- get_rgb_values_format (DEFAULT_COLOR, (white=vcalloc ( 1, sizeof (Color))));
- get_rgb_values_format (INK_COLOR, (ink =vcalloc ( 1, sizeof (Color))));
-
- n_residues=vcalloc ( B->nseq+1, sizeof (int));
- for ( a=0; a<B->nseq; a++)n_residues[a]=B->order[a][1];
-
-
- fps=vfopen_format( name);
- if ( buf==NULL)
- {
- buf=vcalloc (10000, sizeof (int));
- buf2=vcalloc (10000, sizeof (int));
- }
-
- if ( max_len==0)
- {
- for ( a=0; a< B->nseq; a++)
- {if ( strlen (B->name[a])>max_len)
- max_len= strlen ( (B->name[a]));
- }
- }
-
- if ( vfopen_format==vfopen_ascii)
- {
- fps->line+= max_len;
- }
- else if ( max_len>max_name_len)max_len=max_name_len;
-
-
-
- sprintf (buf, "%s, %s(%s)\n%s\nCPU TIME:%d sec.\n%s",PROGRAM,VERSION,DATE, AUTHOR, (B->cpu+get_time())/1000, (S->generic_comment)?S->generic_comment:"");
- fps=print_format_string ( buf,white, ink, fps);
- sprintf (buf, "SCORE=%d\n*\n", S->score_aln);
- fps=print_format_string ( buf,white, ink, fps);
-
- sprintf ( buf2, " BAD AVG GOOD");
- l=strlen(buf2);
- get_rgb_values_format ( DEFAULT_COLOR, box_c);
- fps=print_format_char ( buf2[0],box_c, ink, fps);
- for ( a=1; a<l-1; a++)
- {
- get_rgb_values_format ( MIN(9,a-1), box_c);
- fps=print_format_char ( buf2[a],box_c,ink,fps);
- }
- fps=print_format_char ( buf2[a], box_c, ink, fps);
-
-
- fps=print_format_string ( "\n*\n",white,ink, fps);
-
- for ( a=0;S->score_seq && a< B->nseq; a++)
- {
- get_rgb_values_format (S->score_seq[a]/10, box_c);
- sprintf ( buf, "%-*.*s ", max_len+2,max_len, S->name[a]);
- fps=print_format_string ( buf,box_c, ink,fps);
- sprintf ( buf, ": %3d\n", S->score_seq[a]);
- fps=print_format_string ( buf,white, ink,fps);
- }
- //Print the Consensus score
- get_rgb_values_format (S->score_aln/10, box_c);
- sprintf ( buf, "%-*.*s ", max_len+2,max_len, S->name[S->nseq]);
- fps=print_format_string ( buf,box_c, ink,fps);
- sprintf ( buf, ": %3d\n", S->score_aln);
- fps=print_format_string ( buf,white, ink,fps);
-
- fps=print_format_string ( "\n",white, ink,fps);
-
-
-
- fps->line-=max_len;
- fps->line=fps->line-(fps->line%3);
-
- for (a=0; a<B->len_aln; a+=fps->line)
- {
-
- if ( (fps->n_line+(B->nseq+4))>fps->max_line_ppage && !((B->nseq+4)>fps->max_line_ppage))
- {
- fps=print_format_char ( fps->eop,white, ink, fps);
- }
-
- for (b=0; b<=S->nseq; b++)
- {
- if ( b==S->nseq && print_format_string !=print_ascii_string) fps=print_format_string ( "\n",white, ink, fps);
- sprintf (buf,"%-*.*s ",max_len+2,max_len,S->name[b]);
- fps=print_format_string ( buf,white, ink, fps);
- if(B->output_res_num)
- {
- sprintf (buf, " %4d ", n_residues[b]+1);
- fps=print_format_string ( buf,white, ink, fps);
- }
-
- for (fps->in_seq=1,c=a;c<a+fps->line && c<B->len_aln;c++)
- {
- if (b==S->nseq)
- {
-
- if (S->score_seq)
- {
- int s;
- s=S->seq_al[b][c];
- if ( s>='0' && s<='9')s-='0';
- get_rgb_values_format (s,box_c);
- }
- else get_rgb_values_format (DEFAULT_COLOR,box_c);
- n_residues[b]++;
- s=analyse_aln_column ( B, c);
- }
- else
- {
- n_residues[b]+=!is_gap(B->seq_al[b][c]);
- //s=toupper(B->seq_al[b][c]);
- s=B->seq_al[b][c];
- if (!is_gap(s) && S->seq_al[b][c]!=NO_COLOR_RESIDUE )
- {
- get_rgb_values_format ( S->seq_al[b][c], box_c);
-
- }
- else
- {
- get_rgb_values_format (GAP_COLOR, box_c);
-
- }
-
- }
- fps=print_format_char ( s,box_c, ink,fps);
- }
- fps->in_seq=0;
-
- if(B->output_res_num)
- {
- sprintf (buf, " %4d ",n_residues[b]);
- fps=print_format_string ( buf,white, ink, fps);
- }
-
- fps=print_format_char ( '\n', white, ink, fps);
-
- }
- fps=print_format_string ( "\n\n",white, ink, fps);
- }
- fps=print_format_string ( "\n\n\n",white, ink,fps);
- vfclose_format( fps);
- return 1;
-
- }
-
-
-/*****************************************************************************/
-/* PDF FUNCTIONS */
-/* */
-/*****************************************************************************/
-int output_color_pdf ( Alignment *B,Alignment *S, char *name)
- {
- char *tmp_name;
- char command[LONG_STRING];
-
-
-#ifndef PS2PDF
- fprintf (stderr, "\nPDF FORMAT IS NOT SUPPORTED: INSTALL THE PROGRAM PS2PDF\n");
- myexit (EXIT_FAILURE);
-#else
- tmp_name=vtmpnam(NULL);
-
- output_color_ps (B, S, tmp_name);
- sprintf ( command, "%s %s %s", PS2PDF, tmp_name, name);
- my_system ( command);
- vremove ( tmp_name);
-#endif
-
-
- return 1;
- }
-int output_reliability_pdf ( Alignment *B,Alignment *S, char *name)
- {
- char *tmp_name;
- char command[LONG_STRING];
-
-
-
-#ifndef PS2PDF
- fprintf (stderr, "\nPDF FORMAT IS NOT SUPPORTED: INSTALL THE PROGRAM PS2PDF\n");
- myexit (EXIT_FAILURE);
-#else
- tmp_name=vtmpnam(NULL);
-
- output_reliability_ps (B, S, tmp_name);
- sprintf ( command, "%s %s %s", PS2PDF, tmp_name, name);
- my_system ( command);
- vremove ( tmp_name);
-#endif
-
-
- return 1;
- }
-/*****************************************************************************/
-/* POST SCRIPT FUNCTIONS */
-/* */
-/*****************************************************************************/
-int output_color_ps ( Alignment *B,Alignment *S, char *name)
- {
- output_color_format (B, S, name, vfopen_ps,print_ps_string,print_ps_char,get_rgb_values_ps, vfclose_ps);
- return 1;
- }
-int output_reliability_ps ( Alignment *B,Alignment *S, char *name)
- {
- output_reliability_format (B, S, name, vfopen_ps,print_ps_string,print_ps_char,get_rgb_values_ps, vfclose_ps);
- return 1;
- }
-FILE_format *print_ps_string( char *s, Color *box, Color *ink, FILE_format *fps)
- {
- int l;
- int a;
-
- l=strlen (s);
-
- for ( a=0; a< l; a++)
- {
- fps=print_ps_char (s[a], box, ink, fps);
- }
- return fps;
- }
-
-
-FILE_format * print_ps_char ( int c, Color *box, Color *ink, FILE_format *f)
- {
-
- int ch;
- int cw;
-
- ch=f->font+3;
- cw=f->font-2;
-
- if ( c=='(' || c==')')return f;
- else if (c!='\n' && c!=f->eop)
- {
- fprintf(f->fp,"%d %d moveto\n", f->x,f->y);
- fprintf(f->fp,"0 %d rlineto\n%d 0 rlineto\n0 -%d rlineto\nclosepath\n",ch,cw,ch );
- fprintf(f->fp,"%3.1f %3.1f %3.1f setrgbcolor\nfill\n%3.1f %3.1f %3.1f setrgbcolor\n", box->r,box->g,box->b, ink->r, ink->g, ink->b);
- fprintf(f->fp,"%d %d moveto\n(%c) show\n", f->x+1,f->y+3, c);
-
- f->x+=cw;
- }
- else
- {
- f->n_line++;
- if ( f->n_line==f->max_line_ppage || c==f->eop)
- {
-
- f->n_line=0;
- f->x=f->x0;
- f->y=f->y0;
- fprintf(f->fp,"showpage\n");
- f->n_pages++;
- fprintf ( f->fp, "%c%cPage: %d %d\n",'%', '%', f->n_pages, f->n_pages);
- }
- else
- {
- f->x=f->x0;
- f->y-=ch;
- }
- }
- return f;
- }
-void get_rgb_values_ps ( int val, Color *C)
- {
- get_rgb_values ( val, C);
- }
-
-
-
-FILE_format* vfopen_ps ( char *name)
- {
- FILE_format*fps;
-
- fps=vcalloc ( 1, sizeof ( FILE_format));
- fps->font=9;
- fps->max_line_ppage=60;
- fps->line=get_msa_line_length (0, 0);/*N char per line*/
- fps->x0=15;
- fps->y0=750;
- fps->eop='^';
-
- fps->fp=vfopen ( name, "w");
- fprintf(fps->fp,"%%!PS-Adobe-2.0\n/Courier findfont\n%d scalefont\nsetfont\n",fps->font);
- fprintf(fps->fp, "%%%%Pages: (atend)\n");
- fprintf(fps->fp,"newpath\n");
- ++(fps->n_pages);
- fprintf (fps->fp, "%%%%Page: %d %d\n", fps->n_pages, fps->n_pages);
- fprintf (fps->fp,"%d %d translate\n",fps->x0, fps->y0);
- return fps;
- }
-
-FILE_format* vfclose_ps ( FILE_format *fps)
- {
-
- fprintf(fps->fp,"showpage\n");
- fprintf ( fps->fp, "%%%%Pages: %d\n", fps->n_pages);
- fprintf(fps->fp,"%%%%EOF");
- fprintf(fps->fp,"%%%%\n");
- vfclose ( fps->fp);
- vfree (fps);
- return NULL;
- }
-/*****************************************************************************/
-/* HTML FUNCTIONS */
-/* */
-/*****************************************************************************/
-
-/*****************************************************************************/
-//JM_ADD
-/*****************************************************************************/
-void output_hit_matrix(char *fileName, float **ffpHitScoreMatrix, int nl)
-{
- int i, j;
- FILE *fp;
-
- fp=vfopen(fileName, "w");
- for(i = 0; i < nl; i++)
- {
- for(j = 0; j < i; j++)
- fprintf(fp, "%6.2f ", ffpHitScoreMatrix[j][i-j]);
- for(j = i; j < nl; j++)
- fprintf(fp, "%6.2f ", ffpHitScoreMatrix[i][j-i]);
- fprintf(fp, "\n");
- }
- vfclose(fp);
-}
-
-int output_hit_color_html (Alignment *B, float **ffPScoreTable, int nl, char *name)
-{
- output_hit_color_format (B, ffPScoreTable, nl, name, vfopen_html,print_html_string,print_html_char,get_rgb_values_html, vfclose_html);
- return 1;
-}
-
-int output_hit_color_format (Alignment *B, float **ffPScoreTable, int nl, char *name, \
-FILE_format *(*vfopen_format) ( char *),\
-FILE_format *(*print_format_string) ( char * ,Color *, Color *, FILE_format*),\
-FILE_format *(*print_format_char) ( int ,Color *, Color *, FILE_format*),\
-void (*get_rgb_values_format) ( int ,Color *),\
-FILE_format* (*vfclose_format) ( FILE_format *))
-{
- int a, b;
- int max_name_len=15;
- int max_len=0;
-
- static char *buf;
- static FILE_format *fps;
- Color *ink;
- Color *box_c;
- Color *white;
-
- box_c=vcalloc ( 1, sizeof (Color));
- get_rgb_values_format (DEFAULT_COLOR, (white=vcalloc ( 1, sizeof (Color))));
- get_rgb_values_format (INK_COLOR, (ink =vcalloc ( 1, sizeof (Color))));
-
- if ( max_len==0)
- {
- for ( a=0; a< B->nseq; a++)
- {
- if ( strlen (B->name[a])>max_len)
- max_len= strlen ( (B->name[a]));
- }
- }
- if ( max_len>max_name_len)max_len=max_name_len;
-
- if ( buf==NULL)
- buf=vcalloc (10000, sizeof (int));
- int iEmptyChr = 32; //SPACE ASCIICODE
- int iColorValue;
- fps=vfopen_format(name);
- for (a=0; a < nl; a++)
- {
- sprintf (buf,"%*d ", max_len+2, a);
- fps=print_format_string ( buf,white, ink, fps);
- for(b = 0; b < a; b++)
- {
- iColorValue = (int)((ffPScoreTable[b][a-b]*9)/100);
- get_rgb_values_format (iColorValue, box_c);
- fps=print_format_char (iEmptyChr,box_c, ink,fps);
- }
- for(b = a; b < nl; b++)
- {
- iColorValue = (int)((ffPScoreTable[a][b-a]*9)/100);
- get_rgb_values_format (iColorValue, box_c);
- fps=print_format_char (iEmptyChr,box_c, ink,fps);
- }
- fps=print_format_char ('\n', white, ink, fps);
- }
- vfclose_format(fps);
- vfree(buf);
- vfree(box_c);
- return 1;
-}
-
-/*****************************************************************************/
-
-int output_color_html ( Alignment *B,Alignment *S, char *name)
- {
- output_color_format (B, S, name, vfopen_html,print_html_string,print_html_char,get_rgb_values_html, vfclose_html);
- return 1;
- }
-int output_reliability_html ( Alignment *B,Alignment *S, char *name)
- {
- output_reliability_format (B, S, name, vfopen_html,print_html_string,print_html_char,get_rgb_values_html, vfclose_html);
- return 1;
- }
-FILE_format *print_html_string( char *s, Color *box, Color *ink, FILE_format *fhtml)
- {
- int l;
- int a;
-
- l=strlen (s);
-
- for ( a=0; a< l; a++)
- {
- fhtml=print_html_char (s[a], box, ink, fhtml);
- }
- fhtml=print_html_char (CLOSE_HTML_SPAN,NULL,NULL,fhtml);
- return fhtml;
- }
-
-
-FILE_format * print_html_char ( int c, Color *box, Color *ink, FILE_format *f)
- {
- char html_color[100];
- int in_span, new_color;
- char string[1000];
-
-
- if (c==CLOSE_HTML_SPAN)
- {
- if (f->in_html_span)fprintf ( f->fp, "</span>");
- f->in_html_span=0;
- return f;
- }
-
-
- in_span=f->in_html_span;
- new_color=1-(strm (box->html_color_class, f->previous_html_color));
-
-
-
- sprintf (f->previous_html_color, "%s", box->html_color_class);
- sprintf ( html_color, "class=%s", box->html_color_class);
-
-
- if ( c!=' ')sprintf ( string, "%c", c);
- else sprintf ( string, " ");
-
- if ( !in_span && c!='\n' && c!=f->eop)
- {
- fprintf ( f->fp, "<span %s>%s",html_color,string );
- f->in_html_span=1;
- }
- else if (in_span && !new_color && c!='\n' && c!=f->eop)
- {
-
- fprintf ( f->fp, "%s",string);
- }
- else if (in_span && new_color && c!='\n' && c!=f->eop)
- {
- fprintf ( f->fp, "</span><span %s>%s",html_color,string);
- }
- else if ( c=='\n')
- {
- if ( f->in_html_span)fprintf ( f->fp, "</span>");
- fprintf ( f->fp, "<br>");
- sprintf ( f->previous_html_color, "no_color_set");
- f->in_html_span=0;
- f->n_line++;
- }
-
-
-
-
-
- return f;
- }
-
-void get_rgb_values_html ( int val, Color *C)
- {
- get_rgb_values ( val, C);
- }
-
-FILE_format* vfopen_html ( char *name)
- {
- FILE_format*fhtml;
- Color *color;
- int a;
-
- color=vcalloc ( 1, sizeof (Color));
-
- fhtml=vcalloc ( 1, sizeof ( FILE_format));
- fhtml->font=11;
- fhtml->max_line_ppage=100000;
- fhtml->line=get_msa_line_length (0, 0);/*N char per line*/
- fhtml->x0=15;
- fhtml->y0=800;
- fhtml->eop='^';
- sprintf ( fhtml->previous_html_color, "no_value_set");
- fhtml->fp=vfopen ( name, "w");
-
- fprintf(fhtml->fp,"<html>\n<style>\n");
-
- fprintf(fhtml->fp,"SPAN { font-family: courier new, courier-new, courier; font-weight: bold; font-size: %dpt;}\n", fhtml->font);
- fprintf(fhtml->fp,"SPAN { line-height:100%%}\n");
- fprintf(fhtml->fp,"SPAN { white-space: pre}\n");
-
- for ( a=0; a< 10; a++)
- {
- get_rgb_values_html ( a, color);
- if ( !strm (color->html_color, ""))fprintf (fhtml->fp, "SPAN.%s {background: %s}\n", color->html_color_class, color->html_color );
- else fprintf (fhtml->fp, "SPAN.%s {}\n", color->html_color_class );
- }
- get_rgb_values_html (DEFAULT_COLOR, color);
- if ( !strm (color->html_color, ""))fprintf (fhtml->fp, "SPAN.%s {background: %s}\n", color->html_color_class, color->html_color );
- else fprintf (fhtml->fp, "SPAN.%s {}\n", color->html_color_class );
-
- get_rgb_values_html (GAP_COLOR, color);
- if ( !strm (color->html_color, ""))fprintf (fhtml->fp, "SPAN.%s {background: %s}\n", color->html_color_class, color->html_color );
- else fprintf (fhtml->fp, "SPAN.%s {}\n", color->html_color_class );
-
- get_rgb_values_html (INK_COLOR, color);
- if ( !strm (color->html_color, ""))fprintf (fhtml->fp, "SPAN.%s {background: %s}\n", color->html_color_class, color->html_color );
- else fprintf (fhtml->fp, "SPAN.%s {}\n", color->html_color_class );
-
-
-
- fprintf(fhtml->fp,"</style>");
- fprintf(fhtml->fp,"<body>");
-
- return fhtml;
- }
-FILE_format* vfclose_html ( FILE_format *fhtml)
- {
- if ( fhtml->in_html_span)fprintf(fhtml->fp,"</span>");
- fprintf(fhtml->fp,"</body></html>\n");
- vfclose ( fhtml->fp);
- vfree (fhtml);
- return NULL;
- }
-/*****************************************************************************/
-/* ascii FUNCTIONS */
-/* */
-/*****************************************************************************/
-int output_color_ascii ( Alignment *B,Alignment *S, char *name)
- {
- output_color_format (B, S, name, vfopen_ascii,print_ascii_string,print_ascii_char,get_rgb_values_ascii, vfclose_ascii);
- return 1;
- }
-int output_reliability_ascii ( Alignment *B,Alignment *S, char *name)
- {
- output_reliability_format (B, S, name, vfopen_ascii,print_ascii_string,print_ascii_char,get_rgb_values_ascii, vfclose_ascii);
- return 1;
- }
-
-FILE_format *print_ascii_string( char *s, Color *box, Color *ink, FILE_format *fascii)
- {
- int l;
- int a;
-
- l=strlen (s);
-
- for ( a=0; a< l; a++)
- {
- fascii=print_ascii_char (s[a], box, ink, fascii);
- }
- return fascii;
- }
-
-
-FILE_format * print_ascii_char ( int c, Color *box, Color *ink, FILE_format *f)
- {
- if (box->ascii_value>=0 && f->in_seq)fprintf ( f->fp, "%c", box->ascii_value);
- else fprintf ( f->fp, "%c",c);
- return f;
- }
-
-
-void get_rgb_values_ascii ( int val, Color *C)
- {
-
- if ( val==NO_COLOR_RESIDUE)C->ascii_value='-';
- else if ( val==NO_COLOR_GAP)C->ascii_value='*';
- else if ( val>9)C->ascii_value='#';
- else if ( val>=0 && val<=9) C->ascii_value=val+'0';
- else C->ascii_value=val;
- }
-
-FILE_format* vfopen_ascii ( char *name)
- {
- FILE_format*fascii;
- fascii=vcalloc ( 1, sizeof ( FILE_format));
- fascii->font=11;
- fascii->max_line_ppage=100000;
- fascii->line=get_msa_line_length (0,0);/*N char per line*/
- fascii->x0=15;
- fascii->y0=800;
- fascii->eop='^';
- fascii->fp=vfopen ( name, "w");
-
-
- return fascii;
- }
-FILE_format* vfclose_ascii ( FILE_format *fascii)
- {
- vfclose ( fascii->fp);
- vfree (fascii);
- return NULL;
- }
-
-
-/*****************************************************************************/
-/* seq_score output */
-/* */
-/*****************************************************************************/
-
-int output_seq_reliability_ascii ( Alignment *B,Alignment *S, char *name)
-{
- FILE *fp;
- int a;
- int max_len=0;
- for ( a=0; a< B->nseq; a++)
- {if ( strlen (B->name[a])>max_len)
- max_len= strlen ( (B->name[a]));
- }
-
- fp=vfopen ( name, "w");
- fprintf ( fp, "ALN_SCORE %d\n", S->score_aln);
- for ( a=0; a< S->nseq; a++)fprintf (fp, "SEQ_SCORE %*.*s %3d\n", max_len+2,max_len,S->name[a],S->score_seq[a]);
- vfclose (fp);
-
- return 1;
-}
-
-/*********************************COPYRIGHT NOTICE**********************************/
-/*© Centro de Regulacio Genomica */
-/*and */
-/*Cedric Notredame */
-/*Tue Oct 27 10:12:26 WEST 2009. */
-/*All rights reserved.*/
-/*This file is part of T-COFFEE.*/
-/**/
-/* T-COFFEE is free software; you can redistribute it and/or modify*/
-/* it under the terms of the GNU General Public License as published by*/
-/* the Free Software Foundation; either version 2 of the License, or*/
-/* (at your option) any later version.*/
-/**/
-/* T-COFFEE is distributed in the hope that it will be useful,*/
-/* but WITHOUT ANY WARRANTY; without even the implied warranty of*/
-/* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the*/
-/* GNU General Public License for more details.*/
-/**/
-/* You should have received a copy of the GNU General Public License*/
-/* along with Foobar; if not, write to the Free Software*/
-/* Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA*/
-/*............................................... |*/
-/* If you need some more information*/
-/* cedric.notredame@europe.com*/
-/*............................................... |*/
-/**/
-/**/
-/* */
-/*********************************COPYRIGHT NOTICE**********************************/
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