new version of tcoffee 8.99 not yet compiled for ia32 linux (currently compiled for...

[jabaws.git] / binaries / src / tcoffee / t_coffee_source / util_domain_constraints_list.c

diff --git a/binaries/src/tcoffee/t_coffee_source/util_domain_constraints_list.c b/binaries/src/tcoffee/t_coffee_source/util_domain_constraints_list.c
new file mode 100644 (file)
index 0000000..a96c756
--- /dev/null
+++ b/binaries/src/tcoffee/t_coffee_source/util_domain_constraints_list.c
@@ -0,0 +1,65 @@
+#include <stdlib.h>
+#include <stdio.h>
+#include <math.h>
+#include <stdarg.h>
+#include <string.h>
+
+#include "io_lib_header.h"
+#include "util_lib_header.h"
+#include "define_header.h"
+
+/*********************************************************************/
+/*                                                                   */
+/*                         MISCEANELLOUS                             */
+/*                                                                   */
+/*                                                                   */
+/*********************************************************************/        
+int ** get_undefined_list (Constraint_list *CL)
+         {
+        int **list;
+        int a;
+        CLIST_TYPE x;
+        int *e;
+        list=declare_int ( (CL->S)->nseq+1, (CL->S)->max_len+1);
+
+
+        while (e=extract_entry (CL))
+          {
+            x=e[WE];
+            list[e[SEQ1]][e[R1]]=(x==UNDEFINED);
+            list[e[SEQ2]][e[R2]]=(x==UNDEFINED);
+          }
+        return list;
+        }
+
+
+
+/******************************COPYRIGHT NOTICE*******************************/
+/*© Centro de Regulacio Genomica */
+/*and */
+/*Cedric Notredame */
+/*Fri Feb 18 08:27:45 CET 2011 - Revision 596. */
+/*All rights reserved.*/
+/*This file is part of T-COFFEE.*/
+/**/
+/*    T-COFFEE is free software; you can redistribute it and/or modify*/
+/*    it under the terms of the GNU General Public License as published by*/
+/*    the Free Software Foundation; either version 2 of the License, or*/
+/*    (at your option) any later version.*/
+/**/
+/*    T-COFFEE is distributed in the hope that it will be useful,*/
+/*    but WITHOUT ANY WARRANTY; without even the implied warranty of*/
+/*    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the*/
+/*    GNU General Public License for more details.*/
+/**/
+/*    You should have received a copy of the GNU General Public License*/
+/*    along with Foobar; if not, write to the Free Software*/
+/*    Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA  02111-1307  USA*/
+/*...............................................                                                                                      |*/
+/*  If you need some more information*/
+/*  cedric.notredame@europe.com*/
+/*...............................................                                                                                                                                     |*/
+/**/
+/**/
+/*     */
+/******************************COPYRIGHT NOTICE*******************************/