+++ /dev/null
-PG t_coffee 4_TCOFFEE TCOFFEE
-PG t_coffee type sequence_multiple_aligner
-PG t_coffee ADDRESS http://www.tcoffee.org
-PG t_coffee language C
-PG t_coffee language2 C
-PG t_coffee source http://www.tcoffee.org/Packages/T-COFFEE_distribution.tar.gz
-PG t_coffee update_action always
-PG t_coffee mode tcoffee,mcoffee,rcoffee,expresso,3dcoffee
-
-
-PG clustalw2 4_TCOFFEE CLUSTALW2
-PG clustalw2 type sequence_multiple_aligner
-PG clustalw2 ADDRESS http://www.clustal.org
-PG clustalw2 language C++
-PG clustalw2 language2 CXX
-PG clustalw2 source http://www.clustal.org/download/2.0.10/clustalw-2.0.10-src.tar.gz
-PG clustalw2 mode mcoffee,rcoffee
-
-PG clustalw 4_TCOFFEE CLUSTALW
-PG clustalw type sequence_multiple_aligner
-PG clustalw ADDRESS http://www.clustal.org
-PG clustalw language C
-PG clustalw language2 C
-PG clustalw source http://www.clustal.org/download/1.X/ftp-igbmc.u-strasbg.fr/pub/ClustalW/clustalw1.82.UNIX.tar.gz
-PG clustalw mode mcoffee,rcoffee
-
-PG dialign-t 4_TCOFFEE DIALIGNT
-PG dialign-t type sequence_multiple_aligner
-PG dialign-t ADDRESS http://dialign-tx.gobics.de/
-PG dialign-t DIR /usr/share/dialign-tx/
-PG dialign-t language C
-PG dialign-t language2 C
-PG dialign-t source http://dialign-tx.gobics.de/DIALIGN-TX_1.0.1.tar.gz
-PG dialign-t mode mcoffee
-PG dialign-t binary dialign-t
-
-PG dialign-tx 4_TCOFFEE DIALIGNTX
-PG dialign-tx type sequence_multiple_aligner
-PG dialign-tx ADDRESS http://dialign-tx.gobics.de/
-PG dialign-tx DIR /usr/share/dialign-tx/
-PG dialign-tx language C
-PG dialign-tx language2 C
-PG dialign-tx source http://dialign-tx.gobics.de/DIALIGN-TX_1.0.1.tar.gz
-PG dialign-tx mode mcoffee
-PG dialign-tx binary dialign-tx
-
-PG poa 4_TCOFFEE POA
-PG poa type sequence_multiple_aligner
-PG poa ADDRESS http://www.bioinformatics.ucla.edu/poa/
-PG poa language C
-PG poa language2 C
-PG poa source http://downloads.sourceforge.net/poamsa/poaV2.tar.gz
-PG poa DIR /usr/share/
-PG poa FILE1 blosum80.mat
-PG poa mode mcoffee
-PG poa binary poa
-
-PG probcons 4_TCOFFEE PROBCONS
-PG probcons type sequence_multiple_aligner
-PG probcons ADDRESS http://probcons.stanford.edu/
-PG probcons language2 CXX
-PG probcons language C++
-PG probcons source http://probcons.stanford.edu/probcons_v1_12.tar.gz
-PG probcons mode mcoffee
-PG probcons binary probcons
-
-PG mafft 4_TCOFFEE MAFFT
-PG mafft type sequence_multiple_aligner
-PG mafft ADDRESS http://align.bmr.kyushu-u.ac.jp/mafft/online/server/
-PG mafft language C
-PG mafft language C
-PG mafft source http://align.bmr.kyushu-u.ac.jp/mafft/software/mafft-6.603-with-extensions-src.tgz
-PG mafft windows http://align.bmr.kyushu-u.ac.jp/mafft/software/mafft-6.603-mingw.tar
-PG mafft mode mcoffee,rcoffee
-PG mafft binary mafft.tar.gz
-
-PG muscle 4_TCOFFEE MUSCLE
-PG muscle type sequence_multiple_aligner
-PG muscle ADDRESS http://www.drive5.com/muscle/
-PG muscle language C++
-PG muscle language2 GPP
-PG muscle source http://www.drive5.com/muscle/downloads3.6/muscle3.6_src.tar.gz
-PG muscle windows http://www.drive5.com/muscle/downloads3.6/muscle3.6_win32.zip
-PG muscle linux http://www.drive5.com/muscle/downloads3.6/muscle3.6_linux_ia32.tar.gz
-PG muscle mode mcoffee,rcoffee
-
-
-PG pcma 4_TCOFFEE PCMA
-PG pcma type sequence_multiple_aligner
-PG pcma ADDRESS ftp://iole.swmed.edu/pub/PCMA/
-PG pcma language C
-PG pcma language2 C
-PG pcma source ftp://iole.swmed.edu/pub/PCMA/pcma.tar.gz
-PG pcma mode mcoffee
-
-PG kalign 4_TCOFFEE KALIGN
-PG kalign type sequence_multiple_aligner
-PG kalign ADDRESS http://msa.cgb.ki.se
-PG kalign language C
-PG kalign language2 C
-PG kalign source http://msa.cgb.ki.se/downloads/kalign/current.tar.gz
-PG kalign mode mcoffee
-
-
-PG amap 4_TCOFFEE AMAP
-PG amap type sequence_multiple_aligner
-PG amap ADDRESS http://bio.math.berkeley.edu/amap/
-PG amap language C++
-PG amap language2 CXX
-PG amap source http://baboon.math.berkeley.edu/amap/download/amap.2.2.tar.gz
-PG amap mode mcoffee
-
-
-PG proda 4_TCOFFEE PRODA
-PG proda type sequence_multiple_aligner
-PG proda ADDRESS http://proda.stanford.edu
-PG proda language C++
-PG proda language2 CXX
-PG proda source http://proda.stanford.edu/proda_1_0.tar.gz
-PG proda mode mcoffee
-
-PG prank 4_TCOFFEE PRANK
-PG prank type sequence_multiple_aligner
-PG prank ADDRESS http://www.ebi.ac.uk/goldman-srv/prank/
-PG prank language C++
-PG prank language2 CXX
-PG prank source http://www.ebi.ac.uk/goldman-srv/prank/src/old/prank.src.081202.tgz
-PG prank mode mcoffee
-
-PG sap 4_TCOFFEE SAP
-PG sap type structure_pairwise_aligner
-PG sap ADDRESS http://mathbio.nimr.mrc.ac.uk/wiki/Software
-PG sap language C
-PG sap language2 C
-PG sap source http://www.tcoffee.org/Packages/sap_distribution_TCC_0.6.tar.gz
-PG sap mode expresso,3dcoffee
-
-PG TMalign 4_TCOFFEE TMALIGN
-PG TMalign type structure_pairwise_aligner
-PG TMalign ADDRESS http://zhang.bioinformatics.ku.edu/TM-align/TMalign.f
-PG TMalign language Fortran
-PG TMalign language2 Fortran
-PG TMalign source http://zhang.bioinformatics.ku.edu/TM-align/TMalign.f
-PG TMalign linux http://zhang.bioinformatics.ku.edu/TM-align/TMalign_32.gz
-PG TMalign mode expresso,3dcoffee
-
-
-PG mustang 4_TCOFFEE MUSTANG
-PG mustang type structure_pairwise_aligner
-PG mustang ADDRESS http://www.cs.mu.oz.au/~arun/mustang
-PG mustang language C++
-PG mustang language2 CXX
-PG mustang source http://www.cs.mu.oz.au/~arun/mustang/mustang_v.3.tgz
-PG mustang mode expresso,3dcoffee
-
-PG lsqman 4_TCOFFEE LSQMAN
-PG lsqman type structure_pairwise_aligner
-PG lsqman ADDRESS empty
-PG lsqman language empty
-PG lsqman language2 empty
-PG lsqman source empty
-PG lsqman update_action never
-PG lsqman mode expresso,3dcoffee
-
-PG align_pdb 4_TCOFFEE ALIGN_PDB
-PG align_pdb type structure_pairwise_aligner
-PG align_pdb ADDRESS empty
-PG align_pdb language empty
-PG align_pdb language2 empty
-PG align_pdb source empty
-PG align_pdb update_action never
-PG align_pdb mode expresso,3dcoffee
-
-
-PG fugueali 4_TCOFFEE FUGUE
-PG fugueali type structure_pairwise_aligner
-PG fugueali ADDRESS http://www-cryst.bioc.cam.ac.uk/fugue/download.html
-PG fugueali language empty
-PG fugueali language2 empty
-PG fugueali source empty
-PG fugueali update_action never
-PG fugueali mode expresso,3dcoffee
-
-PG dalilite.pl 4_TCOFFEE DALILITEc
-PG dalilite.pl type structure_pairwise_aligner
-PG dalilite.pl ADDRESS built_in
-PG dalilite.pl ADDRESS2 http://www.ebi.ac.uk/Tools/webservices/services/dalilite
-PG dalilite.pl language Perl
-PG dalilite.pl language2 Perl
-PG dalilite.pl source empty
-PG dalilite.pl update_action never
-PG dalilite.pl mode expresso,3dcoffee
-
-PG probconsRNA 4_TCOFFEE PROBCONSRNA
-PG probconsRNA type RNA_multiple_aligner
-PG probconsRNA ADDRESS http://probcons.stanford.edu/
-PG probconsRNA language C++
-PG probconsRNA language2 CXX
-PG probconsRNA source http://probcons.stanford.edu/probconsRNA.tar.gz
-PG probconsRNA mode mcoffee,rcoffee
-
-PG sfold 4_TCOFFEE CONSAN
-PG sfold type RNA_pairwise_aligner
-PG sfold ADDRESS http://selab.janelia.org/software/consan/
-PG sfold language empty
-PG sfold language2 empty
-PG sfold source empty
-PG sfold update_action never
-PG sfold mode rcoffee
-
-PG RNAplfold 4_TCOFFEE RNAPLFOLD
-PG RNAplfold type RNA_secondarystructure_predictor
-PG RNAplfold ADDRESS http://www.tbi.univie.ac.at/~ivo/RNA/
-PG RNAplfold language C
-PG RNAplfold language2 C
-PG RNAplfold source http://www.tbi.univie.ac.at/~ivo/RNA/ViennaRNA-1.7.2.tar.gz
-PG RNAplfold mode rcoffee
-
-PG hmmtop 4_TCOFFEE HMMTOP
-PG hmmtop type protein_secondarystructure_predictor
-PG hmmtop ADDRESS www.enzim.hu/hmmtop/
-PG hmmtop language C
-PG hmmtop language2 C
-PG hmmtop source empty
-PG hmmtop update_action never
-PG hmmtop mode tcoffee
-
-PG gorIV 4_TCOFFEE GOR4
-PG gorIV type protein_secondarystructure_predictor
-PG gorIV ADDRESS http://mig.jouy.inra.fr/logiciels/gorIV/
-PG gorIV language C
-PG gorIV language2 C
-PG gorIV source http://mig.jouy.inra.fr/logiciels/gorIV/GOR_IV.tar.gz
-PG gorIV update_action never
-PG gorIV mode tcoffee
-
-PG wublast.pl 4_TCOFFEE EBIWUBLASTc
-PG wublast.pl type protein_homology_predictor
-PG wublast.pl ADDRESS built_in
-PG wublast.pl ADDRESS2 http://www.ebi.ac.uk/Tools/webservices/services/wublast
-PG wublast.pl language Perl
-PG wublast.pl language2 Perl
-PG wublast.pl source empty
-PG wublast.pl update_action never
-PG wublast.pl mode psicoffee,expresso,3dcoffee
-
-PG blastpgp.pl 4_TCOFFEE EBIBLASTPGPc
-PG blastpgp.pl type protein_homology_predictor
-PG blastpgp.pl ADDRESS built_in
-PG blastpgp.pl ADDRESS2 http://www.ebi.ac.uk/Tools/webservices/services/blastpgp
-PG blastpgp.pl language Perl
-PG blastpgp.pl language2 Perl
-PG blastpgp.pl source empty
-PG blastpgp.pl update_action never
-PG blastpgp.pl mode psicoffee,expresso,3dcoffee
-
-
-PG blastcl3 4_TCOFFEE NCBIWEBBLAST
-PG blastcl3 type protein_homology_predictor
-PG blastcl3 ADDRESS ftp://ftp.ncbi.nih.gov/blast/executables/LATEST
-PG blastcl3 language C
-PG blastcl3 language2 C
-PG blastcl3 source empty
-PG blastcl3 update_action never
-PG blastcl3 mode psicoffee,expresso,3dcoffee
-
-
-PG blastpgp 4_TCOFFEE NCBIBLAST
-PG blastpgp type protein_homology_predictor
-PG blastpgp ADDRESS ftp://ftp.ncbi.nih.gov/blast/executables/LATEST
-PG blastpgp language C
-PG blastpgp language2 C
-PG blastpgp source empty
-PG blastpgp update_action never
-PG blastpgp mode psicoffee,expresso,3dcoffee
-
-PG SOAP::Lite 4_TCOFFEE SOAPLITE
-PG SOAP::Lite type library
-PG SOAP::Lite ADDRESS http://cpansearch.perl.org/src/MKUTTER/SOAP-Lite-0.710.08/Makefile.PL
-PG SOAP::Lite language Perl
-PG SOAP::Lite language2 Perl
-PG SOAP::Lite source empty
-PG SOAP::Lite mode psicoffee,expresso,3dcoffee
-
-
-MODE tcoffee name tcoffee
-MODE rcoffee name rcoffee
-MODE 3dcoffee name 3dcoffee
-MODE mcoffee name mcoffee
-MODE expresso name expresso
git://source.jalview.org / jabaws.git / blobdiff