Define path to UNIREF database in conf/Executable.properties

[jabaws.git] / conf / Executable.properties

diff --git a/conf/Executable.properties b/conf/Executable.properties
index a4f1aa3..cbc8474 100644 (file)
--- a/conf/Executable.properties
+++ b/conf/Executable.properties
@@ -218,7 +218,13 @@ aacon.limits.file        = conf/settings/AAConLimits.xml
 local.jpred.bin        = binaries/src/jpred/jpred.pl\r
 #cluster.jpred.bin      = /home/jabaws/binaries/src/jpred/jpred.pl\r
 # These paths will be converted to absolute if relative.\r
-jpred.bin.env          = BLASTMAT#binaries/src/jpred/data/blast;UNIREFDB#binaries/src/jpred/unirefdb;\r
+jpred.bin.env          = BLASTMAT#binaries/src/jpred/data/blast\r
+# The varible jpred.data.uniref.path define a path to Uniref90 files used by Jpred. If \r
+# you install the database to a different path chenge the variable here\r
+jpred.data.uniref.path = /data/UNIREFdb\r
+# WARNING!!! \r
+# Redefine jpred.data.uniref.name if you do undestand what the variable means\r
+jpred.data.uniref.name = cluster\r
 ### This parameters specifies the directory where the matrices files are stored\r
 jpred.presets.file     = conf/settings/JpredPresets.xml\r
 jpred.parameters.file  = conf/settings/JpredParameters.xml\r