###########################################################################################\r
# JPRED CONFIGURATION #\r
###########################################################################################\r
-local.jpred.bin = binaries/src/jpred/jpred.pl\r
-#cluster.jpred.bin = /home/jabaws/binaries/src/jpred/jpred.pl\r
-# These paths will be converted to absolute if relative.\r
-jpred.bin.env = BLASTMAT#binaries/src/jpred/data/blast;UNIREFDB#binaries/src/jpred/unirefdb;\r
-### This parameters specifies the directory where the matrices files are stored\r
-jpred.presets.file = conf/settings/JpredPresets.xml\r
-jpred.parameters.file = conf/settings/JpredParameters.xml\r
-jpred.limits.file = conf/settings/JpredLimits.xml\r
-jpred.cluster.cpunum = 4\r
-#jpred.cluster.settings = -l h_cpu=24:00:00 -l ram=6000M\r
+#local.jpred.bin = binaries/src/jpred/jpred.pl\r
+##cluster.jpred.bin = /home/jabaws/binaries/src/jpred/jpred.pl\r
+## These paths will be converted to absolute if relative.\r
+#jpred.bin.env = BLASTMAT#binaries/src/jpred/data/blast\r
+## The varible jpred.data.uniref.path define a path to Uniref90 files used by Jpred. If\r
+## you install the database to a different path chenge the variable here\r
+#jpred.data.uniref.path = /data/UNIREFdb\r
+## WARNING!!!\r
+## Redefine jpred.data.uniref.name if you do undestand what the variable means\r
+#jpred.data.uniref.name = cluster\r
+#### This parameters specifies the directory where the matrices files are stored\r
+#jpred.presets.file = conf/settings/JpredPresets.xml\r
+#jpred.parameters.file = conf/settings/JpredParameters.xml\r
+#jpred.limits.file = conf/settings/JpredLimits.xml\r
+#jpred.cluster.cpunum = 4\r
+##jpred.cluster.settings = -l h_cpu=24:00:00 -l ram=6000M\r
\r
###########################################################################################\r
# RNAALIFOLD CONFIGURATION #\r
#cluster.rnaalifold.bin = /homes/www-jws2/test-servers/tomcat7-jaba3/webapps/jabawsRNA/binaries/src/ViennaRNA/Progs/RNAalifold\r
rnaalifold.parameters.file = conf/settings/RNAalifoldParameters.xml\r
rnaalifold.limits.file = conf/settings/RNAalifoldLimits.xml\r
-rnaalifold.cluster.settings = -P webservices -R y -l h_cpu=24:00:00 -l ram=6000M\r
+#rnaalifold.cluster.settings = -P webservices -R y -l h_cpu=24:00:00 -l ram=6000M\r
\r
###########################################################################################\r
# MSAProbs CONFIGURATION #\r
###########################################################################################\r
local.msaprobs.bin = binaries/src/MSAProbs-0.9.7/MSAProbs/msaprobs\r
-cluster.msaprobs.bin = /homes/www-jws2/test-servers/tomcat7-jaba3/webapps/jabawsRNA/binaries/src/MSAProbs-0.9.7/MSAProbs/msaprobs\r
+#cluster.msaprobs.bin = /homes/www-jws2/test-servers/tomcat7-jaba3/webapps/jabawsRNA/binaries/src/MSAProbs-0.9.7/MSAProbs/msaprobs\r
msaprobs.parameters.file = conf/settings/MSAprobsParameters.xml\r
msaprobs.limits.file = conf/settings/MSAprobsLimits.xml\r
-msaprobs.cluster.settings = -P webservices -R y -l h_cpu=24:00:00 -l ram=6000M\r
+#msaprobs.cluster.settings = -P webservices -R y -l h_cpu=24:00:00 -l ram=6000M\r
\r
###########################################################################################\r
# GLprobs CONFIGURATION #\r
###########################################################################################\r
local.glprobs.bin = binaries/src/GLProbs-1.0/glprobs\r
-cluster.glprobs.bin = /homes/www-jws2/test-servers/tomcat7-jaba3/webapps/jabawsRNA/binaries/src/GLProbs-1.0/glprobs\r
+#cluster.glprobs.bin = /homes/www-jws2/test-servers/tomcat7-jaba3/webapps/jabawsRNA/binaries/src/GLProbs-1.0/glprobs\r
glprobs.parameters.file = conf/settings/GLprobsParameters.xml\r
glprobs.limits.file = conf/settings/GLprobsLimits.xml\r
-glprobs.cluster.settings = -P webservices -R y -l h_cpu=24:00:00 -l ram=6000M\r
+#glprobs.cluster.settings = -P webservices -R y -l h_cpu=24:00:00 -l ram=6000M\r