Adding AAConWS

[jabaws.git] / conf / settings / AAConPresets.xml

diff --git a/conf/settings/AAConPresets.xml b/conf/settings/AAConPresets.xml
new file mode 100644 (file)
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+++ b/conf/settings/AAConPresets.xml
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+<?xml version="1.0" encoding="US-ASCII" standalone="yes"?>\r
+<presets>\r
+ <runnerClassName>compbio.runner.conservation.AACon</runnerClassName>\r
+       <preset>\r
+               <name>Quick conservation</name>\r
+               <description>Collection of fast conservation methods</description>\r
+               <optlist>\r
+                       <option>-m=KABAT,JORES,SCHNEIDER,SHENKIN,GERSTEIN,TAYLOR_GAPS,TAYLOR_NO_GAPS,ZVELIBIL,ARMON,THOMPSON,NOT_LANCET,MIRNY,WILLIAMSON</option>\r
+               </optlist>\r
+       </preset>\r
+       <preset>\r
+               <name>Slow conservation</name>\r
+               <description>Collection of most expensive (slow) conservation methods</description>\r
+               <optlist>\r
+                       <option>-m=LANDGRAF,KARLIN,SANDER,VALDAR,SMERFS</option>\r
+               </optlist>\r
+       </preset>\r
+       <preset>\r
+               <name>Complete conservation</name>\r
+               <description>Calculate conservation with all supported methods</description>\r
+               <optlist>\r
+                       <option>-m=KABAT,JORES,SCHNEIDER,SHENKIN,GERSTEIN,TAYLOR_GAPS,TAYLOR_NO_GAPS,ZVELIBIL,ARMON,THOMPSON,NOT_LANCET,MIRNY,WILLIAMSON,LANDGRAF,KARLIN,SANDER,VALDAR,SMERFS</option>\r
+               </optlist>\r
+       </preset>\r
+</presets>\r
+\r
+\r
+\r
+ \r
+\r