Add JRonn runner, tester, methods to parse jronn output files.

[jabaws.git] / conf / settings / JronnParameters.xml

diff --git a/conf/settings/JronnParameters.xml b/conf/settings/JronnParameters.xml
new file mode 100644 (file)
index 0000000..27e7a86
--- /dev/null
+++ b/conf/settings/JronnParameters.xml
@@ -0,0 +1,17 @@
+<?xml version="1.0" encoding="US-ASCII" standalone="yes"?>\r
+<runnerConfig>\r
+       <runnerClassName>compbio.runner.disorder.Jronn</runnerClassName>\r
+       <prmSeparator>=</prmSeparator>\r
+       <parameters>\r
+               <name>Disorder probability</name>\r
+               <description>The probability of disorder threshold</description>\r
+               <optionNames>-d</optionNames>\r
+               <furtherDetails>prog_docs/jronn.html</furtherDetails>\r
+               <defaultValue>0.53</defaultValue>\r
+               <validValue>\r
+                       <type>Float</type>\r
+                       <min>0.01</min>\r
+                       <max>0.99</max>\r
+               </validValue>\r
+       </parameters>\r
+</runnerConfig>\r