Re-format configuration files

[jabaws.git] / conf / settings / MuscleLimits.xml

diff --git a/conf/settings/MuscleLimits.xml b/conf/settings/MuscleLimits.xml
index b08f536..430968a 100644 (file)
--- a/conf/settings/MuscleLimits.xml
+++ b/conf/settings/MuscleLimits.xml
@@ -1,31 +1,34 @@
 <?xml version="1.0" encoding="US-ASCII" standalone="yes"?>\r
 <limits>\r
- <runnerClassName>compbio.runner.muscle.Muscle</runnerClassName>\r
-       <limit isDefault="true">\r
-               <seqNumber>1000</seqNumber>\r
-               <seqLength>1000</seqLength>\r
-       </limit>\r
-       <limit isDefault="false">\r
-               <preset># LocalEngineExecutionLimit #</preset>\r
-               <seqNumber>20</seqNumber>\r
-               <seqLength>500</seqLength>\r
-       </limit>\r
-       \r
-       <!-- Separate limits for presets        -->\r
-       <limit isDefault="false">\r
-               <preset>Protein alignment(Fastest speed)</preset>\r
-               <seqNumber>2000</seqNumber>\r
-               <seqLength>1000</seqLength>\r
-       </limit>\r
-       <limit isDefault="false">\r
-               <preset>Nucleotide alignment(Fastest speed)</preset>\r
-               <seqNumber>1000</seqNumber>\r
-               <seqLength>3000</seqLength>\r
-       </limit>\r
-       <limit isDefault="false">\r
-               <preset>Huge alignments (speed-oriented)</preset>\r
-               <seqNumber>2000</seqNumber>\r
-               <seqLength>3000</seqLength>\r
-       </limit>\r
-        \r
+    <runnerClassName>compbio.runner.msa.Muscle</runnerClassName>\r
+\r
+    <limit isDefault="true">\r
+        <seqNumber>1000</seqNumber>\r
+        <seqLength>1000</seqLength>\r
+    </limit>\r
+\r
+    <limit isDefault="false">\r
+        <preset># LocalEngineExecutionLimit #</preset>\r
+        <seqNumber>20</seqNumber>\r
+        <seqLength>500</seqLength>\r
+    </limit>\r
+\r
+    <!-- Separate limits for presets -->\r
+    <limit isDefault="false">\r
+        <preset>Protein alignment(Fastest speed)</preset>\r
+        <seqNumber>2000</seqNumber>\r
+        <seqLength>1000</seqLength>\r
+    </limit>\r
+\r
+    <limit isDefault="false">\r
+        <preset>Nucleotide alignment(Fastest speed)</preset>\r
+        <seqNumber>1000</seqNumber>\r
+        <seqLength>3000</seqLength>\r
+    </limit>\r
+\r
+    <limit isDefault="false">\r
+        <preset>Huge alignments (speed-oriented)</preset>\r
+        <seqNumber>2000</seqNumber>\r
+        <seqLength>3000</seqLength>\r
+    </limit>\r
 </limits>\r