Webservice works! but only supports some parameters. Replacing RNAstuct

[jabaws.git] / conf / settings / RNAalifoldParameters.xml

diff --git a/conf/settings/RNAalifoldParameters.xml b/conf/settings/RNAalifoldParameters.xml
index b0e8df0..2561ec4 100644 (file)
--- a/conf/settings/RNAalifoldParameters.xml
+++ b/conf/settings/RNAalifoldParameters.xml
@@ -107,18 +107,18 @@
        </parameters>
 <!--  ?Will Jabaws recognize that arguments for the following params must
 be of the form -s INT and &dash-stochBT=INT -->
-       <parameters isRequired='false'>
-               <name>Stochastic Backtrack</name>
-               <description>Compute a number of random structures</description>
-               <optionNames>-s</optionNames>
+<!--   <parameters isRequired='false'> -->
+<!--           <name>Stochastic Backtrack</name> -->
+<!--           <description>Compute a number of random structures</description> -->
+<!--           <optionNames>-s</optionNames> -->
                <!-- Having multiple optionNames requires a default value but
                        in a parameter defaultValue refers to the argument -->
 <!--           <optionNames>-stochBT</optionNames> -->
-               <defaultValue>5</defaultValue>  <!-- arbitrary -->
-               <validValue>
-                       <type>Int</type>
-               </validValue>
-       </parameters>
+<!--           <defaultValue>5</defaultValue>  arbitrary -->
+<!--           <validValue> -->
+<!--                   <type>Int</type> -->
+<!--           </validValue> -->
+<!--   </parameters> -->
        <parameters isRequired='false'>
                <name>stochBT_en</name>
                <description>Print Backtrack structures</description>
@@ -209,13 +209,14 @@ be of the form -s INT and &dash-stochBT=INT -->
                        <type>String</type>
                </validValue>
        </parameters>
-       <parameters isRequired='false'>
-               <name>betaScale</name>
-               <description>Set scaling of Boltzmann factors</description>
-               <optionNames>--betaScale</optionNames>
-               <defaultValue>1.0</defaultValue>
-               <validValue>
-                       <type>Double</type>
-               </validValue>
-       </parameters>
+       <!--  Is dependant on -p (partfunc) -->
+<!--   <parameters isRequired='false'> -->
+<!--           <name>betaScale</name> -->
+<!--           <description>Set scaling of Boltzmann factors</description> -->
+<!--           <optionNames>-betaScale</optionNames> -->
+<!--           <defaultValue>1.0</defaultValue> -->
+<!--           <validValue> -->
+<!--                   <type>Double</type> -->
+<!--           </validValue> -->
+<!--   </parameters> -->
 </runnerConfig>
\ No newline at end of file