Further work on AAConWS

[jabaws.git] / datamodel / compbio / data / sequence / ConservationMethod.java

diff --git a/datamodel/compbio/data/sequence/ConservationMethod.java b/datamodel/compbio/data/sequence/ConservationMethod.java
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+++ b/datamodel/compbio/data/sequence/ConservationMethod.java
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+/*
+ * Copyright (c) 2010 Agnieszka Golicz & Peter Troshin 
+ * 
+ * Amino Acid Conservation @version: 1.0 
+ * 
+ * This library is free software; you can redistribute it and/or
+ * modify it under the terms of the Apache License version 2 as published by the
+ * Apache Software Foundation This library is distributed in the hope that it
+ * will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the Apache
+ * License for more details. A copy of the license is in apache_license.txt. It
+ * is also available here: http://www.apache.org/licenses/LICENSE-2.0.txt 
+ * Any republication or derived work distributed in source code form must 
+ * include this copyright and license notice.
+ * 
+ */
+package compbio.data.sequence;
+
+/**
+ * Enumeration listing of all the supported methods.
+ * 
+ * @author Agnieszka Golicz & Peter Troshin
+ */
+public enum ConservationMethod {
+       KABAT, JORES, SCHNEIDER, SHENKIN, GERSTEIN, TAYLOR_GAPS, TAYLOR_NO_GAPS, ZVELIBIL, KARLIN, ARMON, THOMPSON, NOT_LANCET, MIRNY, WILLIAMSON, LANDGRAF, SANDER, VALDAR, SMERFS;
+
+       public static ConservationMethod getMethod(String meth) {
+               meth = meth.trim().toLowerCase();
+               if (meth.equalsIgnoreCase(KABAT.toString())) {
+                       return KABAT;
+               }
+               if (meth.equalsIgnoreCase(JORES.toString())) {
+                       return JORES;
+               }
+               if (meth.equalsIgnoreCase(SCHNEIDER.toString())) {
+                       return SCHNEIDER;
+               }
+               if (meth.equalsIgnoreCase(SHENKIN.toString())) {
+                       return SHENKIN;
+               }
+               if (meth.equalsIgnoreCase(GERSTEIN.toString())) {
+                       return GERSTEIN;
+               }
+               if (meth.equalsIgnoreCase(TAYLOR_GAPS.toString())) {
+                       return TAYLOR_GAPS;
+               }
+               if (meth.equalsIgnoreCase(TAYLOR_NO_GAPS.toString())) {
+                       return TAYLOR_NO_GAPS;
+               }
+               if (meth.equalsIgnoreCase(ZVELIBIL.toString())) {
+                       return ZVELIBIL;
+               }
+               if (meth.equalsIgnoreCase(KARLIN.toString())) {
+                       return KARLIN;
+               }
+               if (meth.equalsIgnoreCase(ARMON.toString())) {
+                       return ARMON;
+               }
+               if (meth.equalsIgnoreCase(THOMPSON.toString())) {
+                       return THOMPSON;
+               }
+               if (meth.equalsIgnoreCase(NOT_LANCET.toString())) {
+                       return NOT_LANCET;
+               }
+               if (meth.equalsIgnoreCase(MIRNY.toString())) {
+                       return MIRNY;
+               }
+               if (meth.equalsIgnoreCase(WILLIAMSON.toString())) {
+                       return WILLIAMSON;
+               }
+               if (meth.equalsIgnoreCase(LANDGRAF.toString())) {
+                       return LANDGRAF;
+               }
+               if (meth.equalsIgnoreCase(SANDER.toString())) {
+                       return SANDER;
+               }
+               if (meth.equalsIgnoreCase(VALDAR.toString())) {
+                       return VALDAR;
+               }
+               if (meth.equalsIgnoreCase(SMERFS.toString())) {
+                       return SMERFS;
+               }
+               return null;
+       }
+
+}