Import RNAalifold removed from RNAStructReader. @XmlSeeAlso line added

[jabaws.git] / datamodel / compbio / data / sequence / RNAStructReader.java

diff --git a/datamodel/compbio/data/sequence/RNAStructReader.java b/datamodel/compbio/data/sequence/RNAStructReader.java
index 7ebba4c..5eec46f 100644 (file)
--- a/datamodel/compbio/data/sequence/RNAStructReader.java
+++ b/datamodel/compbio/data/sequence/RNAStructReader.java
@@ -13,8 +13,6 @@ import java.util.regex.Pattern;
 \r
 import org.apache.log4j.Logger;\r
 \r
-import compbio.runner.structure.RNAalifold;\r
-\r
 // Utility class for reading alifold output\r
 \r
 public class RNAStructReader {\r
@@ -157,7 +155,7 @@ public class RNAStructReader {
                return new RNAStructScoreManager(structs, data);\r
        }\r
        \r
-       // Just for the purpose of creating nee TreeSet<Score> objects of length one\r
+       // Just for the purpose of creating new TreeSet<Score> objects of length one\r
        // for adding to a 'data' list to make a ScoreManager\r
        private static TreeSet<Score> newSetScore(Enum<?> res, List<Float> scores) {\r
                // first convert List<Float> to float[]\r