updates to jaba2 from jaba release branch

[jabaws.git] / dundee-conf / Executable.properties

diff --git a/dundee-conf/Executable.properties b/dundee-conf/Executable.properties
index 1f506af..3368475 100644 (file)
--- a/dundee-conf/Executable.properties
+++ b/dundee-conf/Executable.properties
@@ -2,7 +2,7 @@
 ### Clustal configuration ###\r
 local.clustalw.bin.windows=binaries/clustalw2.exe\r
 local.clustalw.bin=binaries/src/clustalw/src/clustalw2\r
-cluster.clustalw.bin=/homes/pvtroshin/workspace/clustengine/binaries/src/clustalw/src/clustalw2\r
+cluster.clustalw.bin=/homes/www-jws2/servers/tomcat-jaba/webapps/jabaws/binaries/src/clustalw/src/clustalw2\r
 # Parameters names which come from RunnerConfig -> Parameters.xml file ultimately are all lowercased in comparison!\r
 # see engine.client.Util.getExecProperty() method for details  \r
 # So they are case insensitive. \r
@@ -17,7 +17,7 @@ local.muscle.bin.windows=binaries/muscle.exe
 local.muscle.bin=binaries/src/muscle/muscle\r
 # Beware version of muscle on the cluster older and does not support some \r
 # of the newer version attributed thus, will not work with Muscle.java wrapper!\r
-cluster.muscle.bin=/homes/pvtroshin/workspace/clustengine/binaries/src/muscle/muscle\r
+cluster.muscle.bin=/homes/www-jws2/servers/tomcat-jaba/webapps/jabaws/binaries/src/muscle/muscle\r
 #The environment variable MUSCLE_MXPATH can be used to specify a path where the matrices are stored\r
 # e.g. MUSCLE_MXPATH#binaries/matrices - but need to privide absolute path!\r
 muscle.-matrix.path=binaries/matrices\r
@@ -29,7 +29,7 @@ muscle.cluster.settings=-l h_cpu=24:00:00 -l h_vmem=6000M -l ram=6000M
 ### Mafft configuration ###\r
 #local.mafft.bin.windows=\r
 local.mafft.bin=binaries/src/mafft/binaries/mafft\r
-cluster.mafft.bin=/homes/pvtroshin/workspace/clustengine/binaries/src/mafft/core/mafft\r
+cluster.mafft.bin=/homes/www-jws2/servers/tomcat-jaba/webapps/jabaws/binaries/src/mafft/binaries/mafft\r
 mafft.bin.env=MAFFT_BINARIES#binaries/src/mafft/binaries;FASTA_4_MAFFT#/sw/bin/fasta34;\r
 mafft.--aamatrix.path=binaries/matrices\r
 mafft.presets.file=conf/settings/MafftPresets.xml\r
@@ -39,7 +39,7 @@ mafft.cluster.settings=-l h_cpu=24:00:00 -l h_vmem=6000M -l ram=6000M
 \r
 ### Tcoffee configuration ###\r
 local.tcoffee.bin=binaries/src/tcoffee/t_coffee_source/t_coffee\r
-cluster.tcoffee.bin=/homes/pvtroshin/workspace/clustengine/binaries/src/tcoffee/t_coffee_source/t_coffee\r
+cluster.tcoffee.bin=/homes/www-jws2/servers/tomcat-jaba/webapps/jabaws/binaries/src/tcoffee/t_coffee_source/t_coffee\r
 #/sw/bin/t_coffee\r
 # Sub matrix support does not work \r
 #tcoffee.-matrix.path=binaries/matrices\r
@@ -52,7 +52,7 @@ tcoffee.cluster.settings=-q 64bit-pri.q -pe smp 4 -l h_vmem=1700M -l ram=1700M -
 ### Probcons configuration ###\r
 #local.probcons.bin.windows=\r
 local.probcons.bin=binaries/src/probcons/probcons\r
-cluster.probcons.bin=/homes/pvtroshin/workspace/clustengine/binaries/src/probcons/probcons\r
+cluster.probcons.bin=/homes/www-jws2/servers/tomcat-jaba/webapps/jabaws/binaries/src/probcons/probcons\r
 #Probcons does not support matrix loading - unrecognised option reported! \r
 probcons.parameters.file=conf/settings/ProbconsParameters.xml\r
 probcons.limits.file=conf/settings/ProbconsLimits.xml\r