updates to jaba2 from jaba release branch

[jabaws.git] / dundee-conf / settings / ClustalPresets.xml

diff --git a/dundee-conf/settings/ClustalPresets.xml b/dundee-conf/settings/ClustalPresets.xml
new file mode 100644 (file)
index 0000000..3115006
--- /dev/null
+++ b/dundee-conf/settings/ClustalPresets.xml
@@ -0,0 +1,13 @@
+<?xml version="1.0" encoding="US-ASCII" standalone="yes"?>\r
+<presets>\r
+ <runnerClassName>compbio.runner.clustal.ClustalW</runnerClassName>\r
+       <preset>\r
+               <name>Disable gap weighting (Speed-oriented)</name>\r
+               <description></description>\r
+               <optlist>\r
+                       <option>-NOPGAP</option>\r
+                       <option>-NOWEIGHTS</option>\r
+                       <option>-NOHGAP</option>\r
+               </optlist>\r
+       </preset>\r
+</presets>\r