\r
package compbio.engine.client;\r
\r
+import java.util.Arrays;\r
import java.util.Collections;\r
import java.util.Map;\r
\r
}\r
\r
static String[] getEnvVariableList(String property) {\r
+ property = property.trim(); \r
if (containsMultipleVariables(property)) {\r
return property.split(NEXT_ENV_PROPERTY_DELIMITER);\r
}\r
"Must be only one value per property! Make sure the property does not contain '"\r
+ PROP_NAME_VALUE_SEPARATOR + "' symbol!");\r
}\r
- if (vars.length == 0) {\r
+ if (vars.length == 0 || vars.length==1) {\r
+ log.warn("Environmental variable '"+property+"' does not have a value!");\r
return "";\r
}\r
return vars[1];\r
return property.contains(PROP_NAME_VALUE_SEPARATOR);\r
}\r
\r
- /**\r
- * This method change relative paths to absolute for two environmental\r
- * variables MAFFT-BINARIES and FASTA_4_MAFFT to avoid requesting every user\r
- * to specify these path for every installation\r
- */\r
- void absolutiseMafftpaths() {\r
\r
- }\r
\r
/*\r
* This is a horrible hack, but it only requires to simplify configuration\r
+ PROP_NAME_VALUE_SEPARATOR + "propertyValue. "\r
+ "Given values is: " + evar);\r
}\r
+ evar=evar.trim(); \r
String varName = getEnvVariableName(evar);\r
String varValue = getEnvVariableValue(evar);\r
// absolutise local paths to mafft env variables\r