Reverted some changes I made for testing back to their original states.

[jabaws.git] / runner / compbio / runner / Util.java

diff --git a/runner/compbio/runner/Util.java b/runner/compbio/runner/Util.java
index f9106ca..6f0ec09 100644 (file)
--- a/runner/compbio/runner/Util.java
+++ b/runner/compbio/runner/Util.java
@@ -38,12 +38,13 @@ import java.util.Scanner;
 \r
 \r
 \r
+\r
 import org.apache.log4j.Logger;\r
 \r
 import compbio.data.sequence.Alignment;\r
 import compbio.data.sequence.ClustalAlignmentUtil;\r
 import compbio.data.sequence.FastaSequence;\r
-import compbio.data.sequence.RNAStruct;\r
+import compbio.data.sequence.RNAStructScoreManager;\r
 import compbio.data.sequence.Score;\r
 import compbio.data.sequence.ScoreManager;\r
 import compbio.data.sequence.Range;\r
@@ -167,7 +168,7 @@ public final class Util {
        }\r
 \r
        \r
-       public static ScoreManager readRNAStruct(String workDirectory,\r
+       public static RNAStructScoreManager readRNAStruct(String workDirectory,\r
                        String structFile) throws IOException, FileNotFoundException {\r
                \r
                assert !compbio.util.Util.isEmpty(workDirectory);\r