Refactoring: rename duplicated Util classes

[jabaws.git] / runner / compbio / runner / msa / ClustalW.java

diff --git a/runner/compbio/runner/msa/ClustalW.java b/runner/compbio/runner/msa/ClustalW.java
index a3bab89..2ce0d03 100644 (file)
--- a/runner/compbio/runner/msa/ClustalW.java
+++ b/runner/compbio/runner/msa/ClustalW.java
@@ -29,7 +29,7 @@ import compbio.data.sequence.Alignment;
 import compbio.data.sequence.UnknownFileFormatException;\r
 import compbio.engine.client.SkeletalExecutable;\r
 import compbio.metadata.ResultNotAvailableException;\r
-import compbio.runner.Util;\r
+import compbio.runner.RunnerUtil;\r
 \r
 public class ClustalW extends SkeletalExecutable<ClustalW> {\r
 \r
@@ -67,7 +67,7 @@ public class ClustalW extends SkeletalExecutable<ClustalW> {
        public Alignment getResults(String workDirectory)\r
                        throws ResultNotAvailableException {\r
                try {\r
-                       return Util.readClustalFile(workDirectory, getOutput());\r
+                       return RunnerUtil.readClustalFile(workDirectory, getOutput());\r
                } catch (FileNotFoundException e) {\r
                        log.error(e.getMessage(), e.getCause());\r
                        throw new ResultNotAvailableException(e);\r