Refactoring: rename duplicated Util classes

[jabaws.git] / runner / compbio / runner / structure / RNAalifold.java

diff --git a/runner/compbio/runner/structure/RNAalifold.java b/runner/compbio/runner/structure/RNAalifold.java
index 996e7d8..c0a50fe 100644 (file)
--- a/runner/compbio/runner/structure/RNAalifold.java
+++ b/runner/compbio/runner/structure/RNAalifold.java
@@ -9,7 +9,7 @@ import compbio.data.sequence.RNAStructScoreManager;
 import compbio.engine.client.PipedExecutable;\r
 import compbio.engine.client.SkeletalExecutable;\r
 import compbio.metadata.ResultNotAvailableException;\r
-import compbio.runner.Util;\r
+import compbio.runner.RunnerUtil;\r
 \r
 public class RNAalifold extends SkeletalExecutable<RNAalifold> \r
                implements PipedExecutable<RNAalifold> {\r
@@ -48,7 +48,7 @@ public class RNAalifold extends SkeletalExecutable<RNAalifold>
        public RNAStructScoreManager getResults(String workDirectory)\r
                        throws ResultNotAvailableException {\r
                try {\r
-                       return Util.readRNAStruct(workDirectory, getOutput());\r
+                       return RunnerUtil.readRNAStruct(workDirectory, getOutput());\r
                } catch (FileNotFoundException e) {\r
                        log.error(e.getMessage(), e.getCause());\r
                        throw new ResultNotAvailableException(e);\r