fixes JAL-778 - flag to indicate binding between an alignment panel and Jmol view...

[jalview.git] / schemas / jalview.xsd

diff --git a/schemas/jalview.xsd b/schemas/jalview.xsd
index c847b6d..d179ab2 100755 (executable)
--- a/schemas/jalview.xsd
+++ b/schemas/jalview.xsd
@@ -52,6 +52,20 @@
                                                                                                                                                viewId will appear for each instance.</xs:documentation>
                                                                                                                                        </xs:annotation>
                                                                                                                                </xs:attribute>
+                                                                                                                               <xs:attribute name="linkAlignPanel" type="xs:boolean" use="optional" default="true">
+                                                                                                                               <xs:annotation>
+                                                                                                                               <xs:documentation>
+                                                                                                                                       Flag set if the alignment panel containing this JSeq should be explicitly linked to the Jmol view referred to/created by this structureState (since Jalview 2.7).
+                                                                                                                               </xs:documentation>
+                                                                                                                               </xs:annotation>
+                                                                                                                               </xs:attribute>
+                                                                                                                               <xs:attribute name="alignwithAlignPanel" type="xs:boolean" use="optional" default="true">
+                                                                                                                               <xs:annotation>
+                                                                                                                               <xs:documentation>
+                                                                                                                                       Flag set if the alignment panel containing this JSeq should be included in those used to perform a structure superposition (since Jalview 2.7).
+                                                                                                                               </xs:documentation>
+                                                                                                                               </xs:annotation>
+                                                                                                                               </xs:attribute>
                                                                                                                                        
                                                                                                                                
                                                                                                                        </xs:extension>