JAL-3253 preliminary static fixes for JavaScript part 2

[jalview.git] / src / jalview / ext / ensembl / EnsemblMap.java

diff --git a/src/jalview/ext/ensembl/EnsemblMap.java b/src/jalview/ext/ensembl/EnsemblMap.java
index add71b3..9789819 100644 (file)
--- a/src/jalview/ext/ensembl/EnsemblMap.java
+++ b/src/jalview/ext/ensembl/EnsemblMap.java
@@ -3,10 +3,8 @@ package jalview.ext.ensembl;
 import jalview.datamodel.AlignmentI;
 import jalview.datamodel.DBRefSource;
 import jalview.datamodel.GeneLociI;
-import jalview.util.JSONUtils;
 import jalview.util.MapList;
 
-import java.io.BufferedReader;
 import java.io.IOException;
 import java.net.MalformedURLException;
 import java.net.URL;
@@ -154,7 +152,9 @@ public class EnsemblMap extends EnsemblRestClient
     {
       Iterator<Object> rvals = (Iterator<Object>) getJSON(url, null, -1, MODE_ITERATOR, MAPPINGS);
       if (rvals == null)
-         return null;
+      {
+        return null;
+      }
       while (rvals.hasNext())
       {
         // todo check for "mapped"
@@ -221,7 +221,7 @@ public class EnsemblMap extends EnsemblRestClient
     URL url = null;
     try
     {
-      String domain = new EnsemblInfo().getDomain(division);
+      String domain = EnsemblInfo.getDomain(division);
       if (domain != null)
       {
         url = getIdMapUrl(domain, accession, start, end, cdsOrCdna);
@@ -286,7 +286,9 @@ GeneLociI parseIdMappingResponse(URL url, String accession,
     {
       Iterator<Object> rvals = (Iterator<Object>) getJSON(url, null, -1, MODE_ITERATOR, MAPPINGS);
       if (rvals == null)
-         return null;
+      {
+        return null;
+      }
       String assembly = null;
       String chromosome = null;
       int fromEnd = 0;