fixes JAL-778 - flag to indicate binding between an alignment panel and Jmol view...

[jalview.git] / src / jalview / schemabinding / version2 / Viewport.java

diff --git a/src/jalview/schemabinding/version2/Viewport.java b/src/jalview/schemabinding/version2/Viewport.java
index 7dbeedd..49b0db2 100755 (executable)
--- a/src/jalview/schemabinding/version2/Viewport.java
+++ b/src/jalview/schemabinding/version2/Viewport.java
@@ -1,21 +1,10 @@
 /*\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.1)\r
- * Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
- * \r
- * This program is free software; you can redistribute it and/or\r
- * modify it under the terms of the GNU General Public License\r
- * as published by the Free Software Foundation; either version 2\r
- * of the License, or (at your option) any later version.\r
- * \r
- * This program is distributed in the hope that it will be useful,\r
- * but WITHOUT ANY WARRANTY; without even the implied warranty of\r
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the\r
- * GNU General Public License for more details.\r
- * \r
- * You should have received a copy of the GNU General Public License\r
- * along with this program; if not, write to the Free Software\r
- * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA\r
+ * This class was automatically generated with \r
+ * <a href="http://www.castor.org">Castor 1.1</a>, using an XML\r
+ * Schema.\r
+ * $Id$\r
  */\r
+\r
 package jalview.schemabinding.version2;\r
 \r
   //---------------------------------/\r
@@ -268,14 +257,14 @@ public class Viewport implements java.io.Serializable {
     private boolean _has_showConsensusHistogram;\r
 \r
     /**\r
-     * Field _showConsensusProfile.\r
+     * Field _showSequenceLogo.\r
      */\r
-    private boolean _showConsensusProfile = false;\r
+    private boolean _showSequenceLogo = false;\r
 \r
     /**\r
-     * keeps track of state for field: _showConsensusProfile\r
+     * keeps track of state for field: _showSequenceLogo\r
      */\r
-    private boolean _has_showConsensusProfile;\r
+    private boolean _has_showSequenceLogo;\r
 \r
     /**\r
      * Field _ignoreGapsinConsensus.\r
@@ -610,13 +599,6 @@ public class Viewport implements java.io.Serializable {
 \r
     /**\r
      */\r
-    public void deleteShowConsensusProfile(\r
-    ) {\r
-        this._has_showConsensusProfile= false;\r
-    }\r
-\r
-    /**\r
-     */\r
     public void deleteShowDbRefTooltip(\r
     ) {\r
         this._has_showDbRefTooltip= false;\r
@@ -659,6 +641,13 @@ public class Viewport implements java.io.Serializable {
 \r
     /**\r
      */\r
+    public void deleteShowSequenceLogo(\r
+    ) {\r
+        this._has_showSequenceLogo= false;\r
+    }\r
+\r
+    /**\r
+     */\r
     public void deleteShowText(\r
     ) {\r
         this._has_showText= false;\r
@@ -1026,16 +1015,6 @@ public class Viewport implements java.io.Serializable {
     }\r
 \r
     /**\r
-     * Returns the value of field 'showConsensusProfile'.\r
-     * \r
-     * @return the value of field 'ShowConsensusProfile'.\r
-     */\r
-    public boolean getShowConsensusProfile(\r
-    ) {\r
-        return this._showConsensusProfile;\r
-    }\r
-\r
-    /**\r
      * Returns the value of field 'showDbRefTooltip'.\r
      * \r
      * @return the value of field 'ShowDbRefTooltip'.\r
@@ -1096,6 +1075,16 @@ public class Viewport implements java.io.Serializable {
     }\r
 \r
     /**\r
+     * Returns the value of field 'showSequenceLogo'.\r
+     * \r
+     * @return the value of field 'ShowSequenceLogo'.\r
+     */\r
+    public boolean getShowSequenceLogo(\r
+    ) {\r
+        return this._showSequenceLogo;\r
+    }\r
+\r
+    /**\r
      * Returns the value of field 'showText'.\r
      * \r
      * @return the value of field 'ShowText'.\r
@@ -1409,17 +1398,6 @@ public class Viewport implements java.io.Serializable {
     }\r
 \r
     /**\r
-     * Method hasShowConsensusProfile.\r
-     * \r
-     * @return true if at least one ShowConsensusProfile has been\r
-     * added\r
-     */\r
-    public boolean hasShowConsensusProfile(\r
-    ) {\r
-        return this._has_showConsensusProfile;\r
-    }\r
-\r
-    /**\r
      * Method hasShowDbRefTooltip.\r
      * \r
      * @return true if at least one ShowDbRefTooltip has been added\r
@@ -1483,6 +1461,16 @@ public class Viewport implements java.io.Serializable {
     }\r
 \r
     /**\r
+     * Method hasShowSequenceLogo.\r
+     * \r
+     * @return true if at least one ShowSequenceLogo has been added\r
+     */\r
+    public boolean hasShowSequenceLogo(\r
+    ) {\r
+        return this._has_showSequenceLogo;\r
+    }\r
+\r
+    /**\r
      * Method hasShowText.\r
      * \r
      * @return true if at least one ShowText has been added\r
@@ -1723,16 +1711,6 @@ public class Viewport implements java.io.Serializable {
     }\r
 \r
     /**\r
-     * Returns the value of field 'showConsensusProfile'.\r
-     * \r
-     * @return the value of field 'ShowConsensusProfile'.\r
-     */\r
-    public boolean isShowConsensusProfile(\r
-    ) {\r
-        return this._showConsensusProfile;\r
-    }\r
-\r
-    /**\r
      * Returns the value of field 'showDbRefTooltip'.\r
      * \r
      * @return the value of field 'ShowDbRefTooltip'.\r
@@ -1793,6 +1771,16 @@ public class Viewport implements java.io.Serializable {
     }\r
 \r
     /**\r
+     * Returns the value of field 'showSequenceLogo'.\r
+     * \r
+     * @return the value of field 'ShowSequenceLogo'.\r
+     */\r
+    public boolean isShowSequenceLogo(\r
+    ) {\r
+        return this._showSequenceLogo;\r
+    }\r
+\r
+    /**\r
      * Returns the value of field 'showText'.\r
      * \r
      * @return the value of field 'ShowText'.\r
@@ -2192,18 +2180,6 @@ public class Viewport implements java.io.Serializable {
     }\r
 \r
     /**\r
-     * Sets the value of field 'showConsensusProfile'.\r
-     * \r
-     * @param showConsensusProfile the value of field\r
-     * 'showConsensusProfile'.\r
-     */\r
-    public void setShowConsensusProfile(\r
-            final boolean showConsensusProfile) {\r
-        this._showConsensusProfile = showConsensusProfile;\r
-        this._has_showConsensusProfile = true;\r
-    }\r
-\r
-    /**\r
      * Sets the value of field 'showDbRefTooltip'.\r
      * \r
      * @param showDbRefTooltip the value of field 'showDbRefTooltip'\r
@@ -2274,6 +2250,17 @@ public class Viewport implements java.io.Serializable {
     }\r
 \r
     /**\r
+     * Sets the value of field 'showSequenceLogo'.\r
+     * \r
+     * @param showSequenceLogo the value of field 'showSequenceLogo'\r
+     */\r
+    public void setShowSequenceLogo(\r
+            final boolean showSequenceLogo) {\r
+        this._showSequenceLogo = showSequenceLogo;\r
+        this._has_showSequenceLogo = true;\r
+    }\r
+\r
+    /**\r
      * Sets the value of field 'showText'.\r
      * \r
      * @param showText the value of field 'showText'.\r