JAL-3253 preliminary static fixes for JavaScript part 2

[jalview.git] / src / jalview / ws / SequenceFetcher.java

diff --git a/src/jalview/ws/SequenceFetcher.java b/src/jalview/ws/SequenceFetcher.java
index 18e25cc..0d9a926 100644 (file)
--- a/src/jalview/ws/SequenceFetcher.java
+++ b/src/jalview/ws/SequenceFetcher.java
@@ -20,13 +20,8 @@
  */
 package jalview.ws;
 
+import jalview.datamodel.DBRefSource;
 import jalview.ext.ensembl.EnsemblGene;
-import jalview.ws.dbsources.EmblCdsSource;
-import jalview.ws.dbsources.EmblSource;
-import jalview.ws.dbsources.Pdb;
-import jalview.ws.dbsources.PfamFull;
-import jalview.ws.dbsources.PfamSeed;
-import jalview.ws.dbsources.RfamSeed;
 import jalview.ws.dbsources.Uniprot;
 import jalview.ws.seqfetcher.ASequenceFetcher;
 import jalview.ws.seqfetcher.DbSourceProxy;
@@ -49,15 +44,30 @@ public class SequenceFetcher extends ASequenceFetcher
    */
   public SequenceFetcher()
   {
-    addDBRefSourceImpl(EnsemblGene.class);
-    // addDBRefSourceImpl(EnsemblGenomes.class);
-    addDBRefSourceImpl(EmblSource.class);
-    addDBRefSourceImpl(EmblCdsSource.class);
-    addDBRefSourceImpl(Uniprot.class);
-    addDBRefSourceImpl(Pdb.class);
-    addDBRefSourceImpl(PfamFull.class);
-    addDBRefSourceImpl(PfamSeed.class);
-    addDBRefSourceImpl(RfamSeed.class);
+    addAllDatabases();
+  }
+
+  public void addAllDatabases()
+  {
+    addDBRefSourceImpl(EnsemblGene.class); // includes EnsemblGenomes.class
+    addDBRefSourceImpl(Uniprot.class); // includes UniprotName.class
+    // addDBRefSourceImpl(EmblSource.class);
+    // addDBRefSourceImpl(EmblCdsSource.class);
+    // addDBRefSourceImpl(Pdb.class);
+    // addDBRefSourceImpl(PfamFull.class);
+    // addDBRefSourceImpl(PfamSeed.class);
+    // addDBRefSourceImpl(RfamSeed.class);
+    addDBRefSourceImpl(DBRefSource.EMBL,
+            "jalview.ws.dbsources.EmblSource");
+    addDBRefSourceImpl(DBRefSource.EMBLCDS,
+            "jalview.ws.dbsources.EmblCdsSource");
+    addDBRefSourceImpl(DBRefSource.PDB, "jalview.ws.dbsources.Pdb");
+    addDBRefSourceImpl(DBRefSource.PFAM_FULL,
+            "jalview.ws.dbsources.PfamFull");
+    addDBRefSourceImpl(DBRefSource.PFAM_SEED,
+            "jalview.ws.dbsources.PfamSeed");
+    addDBRefSourceImpl(DBRefSource.RFAM_SEED,
+            "jalview.ws.dbsources.RfamSeed");
   }
 
   /**