IUPred wrapper, tester and new binary for X64 linux systems

[jabaws.git] / testsrc / compbio / data / sequence / SequenceUtilTester.java

diff --git a/testsrc/compbio/data/sequence/SequenceUtilTester.java b/testsrc/compbio/data/sequence/SequenceUtilTester.java
index d992216..7621dcc 100644 (file)
--- a/testsrc/compbio/data/sequence/SequenceUtilTester.java
+++ b/testsrc/compbio/data/sequence/SequenceUtilTester.java
@@ -291,10 +291,17 @@ public class SequenceUtilTester {
        public void testReadIUPredForShortAndLongDisorder() {\r
                try {\r
                        Map<String, Score> scores = SequenceUtil.readIUPred(new File(\r
-                                       AllTestSuit.TEST_DATA_PATH, "output.long"),\r
-                                       IUPredResult.Long);\r
+                                       AllTestSuit.TEST_DATA_PATH, "output.long"));\r
                        ScoreManager man = ScoreManager.newInstanceSingleScore(scores);\r
-                       man.writeOut(new PrintWriter(System.out, true));\r
+                       // man.writeOut(new PrintWriter(System.out, true));\r
+                       assertNotNull(scores);\r
+                       assertEquals(2, scores.size());\r
+\r
+                       Score score = scores.get("P50_HUMAN");\r
+                       assertNotNull(score);\r
+                       assertEquals(0, score.getRanges().size());\r
+                       assertEquals(393, score.getScores().size());\r
+                       assertEquals("Long", score.getMethod());\r
                } catch (IOException e) {\r
                        e.printStackTrace();\r
                        fail(e.getLocalizedMessage());\r
@@ -308,10 +315,20 @@ public class SequenceUtilTester {
        public void testReadIUPredForGlobDomain() {\r
                try {\r
                        Map<String, Score> scores = SequenceUtil.readIUPred(new File(\r
-                                       AllTestSuit.TEST_DATA_PATH, "output.glob"),\r
-                                       IUPredResult.Glob);\r
+                                       AllTestSuit.TEST_DATA_PATH, "output.glob"));\r
+                       assertNotNull(scores);\r
+                       assertEquals(2, scores.size());\r
                        ScoreManager man = ScoreManager.newInstanceSingleScore(scores);\r
-                       man.writeOut(new PrintWriter(System.out, true));\r
+                       // man.writeOut(new PrintWriter(System.out, true));\r
+                       assertEquals(2, man.getNumberOfSeq());\r
+                       Score score = scores.get("P53_HUMA");\r
+                       assertNotNull(score);\r
+                       assertEquals(2, score.getRanges().size());\r
+                       assertEquals(0, score.getScores().size());\r
+                       assertEquals("Glob", score.getMethod());\r
+\r
+                       score = scores.get("Foobar_dundeefriends");\r
+                       assertEquals(0, score.getRanges().size());\r
                } catch (IOException e) {\r
                        e.printStackTrace();\r
                        fail(e.getLocalizedMessage());\r
@@ -320,7 +337,6 @@ public class SequenceUtilTester {
                        fail(e.getLocalizedMessage());\r
                }\r
        }\r
-\r
        @Test\r
        public void testReadAAConResults() {\r
                try {\r