import java.io.FileOutputStream;\r
import java.io.IOException;\r
import java.io.InputStream;\r
+import java.io.PrintWriter;\r
import java.util.HashMap;\r
import java.util.HashSet;\r
import java.util.List;\r
Map<String, Set<Score>> aseqs = SequenceUtil.readDisembl(fio);\r
assertNotNull(aseqs);\r
assertEquals(aseqs.size(), 3);\r
- // System.out.println(aseqs);\r
+ ScoreManager sman = ScoreManager.newInstance(aseqs);\r
+\r
for (String fs : aseqs.keySet()) {\r
assertTrue(" Foobar_dundeefriends Foobar dundeefriends "\r
.contains(fs));\r
}\r
assertEquals(scores.size(), 5);\r
}\r
+\r
+ ScoreManager sm = ScoreManager.newInstanceSingleSequence(scores);\r
+ sm.writeOut(new PrintWriter(System.out, true));\r
+\r
for (Score score : scores) {\r
\r
if (score.getMethod()\r