import java.io.FileOutputStream;\r
import java.io.IOException;\r
import java.io.InputStream;\r
+import java.util.HashMap;\r
import java.util.HashSet;\r
import java.util.List;\r
import java.util.Map;\r
try {\r
fio = new FileInputStream(AllTestSuit.TEST_DATA_PATH\r
+ "disembl.out");\r
- Map<FastaSequence, Set<Score>> aseqs = SequenceUtil\r
+ Map<FastaSequence, HashSet<Score>> aseqs = SequenceUtil\r
.readDisembl(fio);\r
assertNotNull(aseqs);\r
assertEquals(aseqs.size(), 3);\r
- System.out.println(aseqs);\r
+ // System.out.println(aseqs);\r
for (FastaSequence fs : aseqs.keySet()) {\r
assertTrue(" Foobar_dundeefriends Foobar dundeefriends "\r
.contains(fs.getId()));\r
try {\r
fio = new FileInputStream(AllTestSuit.TEST_DATA_PATH\r
+ "globplot.out");\r
- Map<FastaSequence, Set<Score>> aseqs = SequenceUtil\r
+ HashMap<FastaSequence, HashSet<Score>> aseqs = SequenceUtil\r
.readGlobPlot(fio);\r
assertNotNull(aseqs);\r
assertEquals(aseqs.size(), 3);\r
assertEquals(scores.size(), 5);\r
}\r
for (Score score : scores) {\r
- \r
+\r
if (score.getMethod() == (Enum<?>) GlobProtResult.Disorder) {\r
assertEquals(score.getRanges().size(), 7);\r
assertTrue(score.getScores().isEmpty());\r
}\r
- if (score.getMethod() == (Enum<?>)GlobProtResult.Dydx) {\r
+ if (score.getMethod() == (Enum<?>) GlobProtResult.Dydx) {\r
assertFalse(score.getScores().isEmpty());\r
assertTrue(score.getRanges().isEmpty());\r
}\r