--- /dev/null
+<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
+<runConfiguration>
+ <taskId>Muscle#1478763156946965</taskId>
+ <workDirectory>/cluster/gjb_lab/fc/www-jws2/jaba/local_jobsout/Muscle#1478763156946965</workDirectory>
+ <parameters>
+ <paramList>
+ <entry>
+ <key>-clwstrict</key>
+ <value>
+ <position>-1</position>
+ <name>-clwstrict</name>
+ </value>
+ </entry>
+ <entry>
+ <key>-quiet</key>
+ <value>
+ <position>-1</position>
+ <name>-quiet</name>
+ </value>
+ </entry>
+ <entry>
+ <key>-verbose</key>
+ <value>
+ <position>-1</position>
+ <name>-verbose</name>
+ </value>
+ </entry>
+ <entry>
+ <key>-log</key>
+ <value>
+ <position>-1</position>
+ <name>-log</name>
+ <value>stat.log</value>
+ </value>
+ </entry>
+ <entry>
+ <key>-in</key>
+ <value>
+ <position>-1</position>
+ <name>-in</name>
+ <value>fasta.in</value>
+ </value>
+ </entry>
+ <entry>
+ <key>-out</key>
+ <value>
+ <position>-1</position>
+ <name>-out</name>
+ <value>fasta.out</value>
+ </value>
+ </entry>
+ </paramList>
+ <nameValueSeparator> </nameValueSeparator>
+ </parameters>
+ <error>error.txt</error>
+ <output>fasta.out</output>
+ <input>/cluster/gjb_lab/fc/www-jws2/jaba/local_jobsout/Muscle#1478763156946965/fasta.in</input>
+ <runnerClassName>compbio.runner.msa.Muscle</runnerClassName>
+</runConfiguration>