import org.apache.log4j.Logger;\r
\r
import compbio.engine.client.Executable;\r
+import compbio.engine.client.PathValidator;\r
import compbio.metadata.JobStatus;\r
import compbio.util.FileUtil;\r
import compbio.ws.client.Services;\r
\r
static SimpleDateFormat DF = new SimpleDateFormat("dd/MM/yyyy hh:mm:ss");\r
\r
+ final private File workDirectory;\r
final private List<JobStat> stats;\r
/**\r
* Consider the job that has been working for longer than timeOutInHours\r
public ExecutionStatCollector(String workDirectory, int timeOutInHours) {\r
log.info("Starting stat collector for directory: " + workDirectory);\r
log.info("Maximum allowed runtime(h): " + timeOutInHours);\r
- File[] files = FileUtil.getFiles(workDirectory, directories);\r
+ if (!PathValidator.isValidDirectory(workDirectory)) {\r
+ throw new IllegalArgumentException("workDirectory '"\r
+ + workDirectory + "' does not exist!");\r
+ }\r
+ this.workDirectory = new File(workDirectory);\r
stats = new ArrayList<JobStat>();\r
- assert timeOutInHours > 0;\r
- this.timeOutInHours = timeOutInHours;\r
- for (File file : files) {\r
- JobDirectory jd = new JobDirectory(file);\r
- JobStat jstat = jd.getJobStat();\r
- // Do not record stats on the job that has not completed yet\r
- if (hasCompleted(jd)) {\r
- stats.add(jstat);\r
- } else {\r
- log.debug("Skipping the job: " + jstat);\r
- log.debug("As it has not completed yet");\r
- }\r
- // System.out.println(jd.getJobStat().getJobReportTabulated());\r
+ if (timeOutInHours <= 0) {\r
+ throw new IllegalArgumentException(\r
+ "Timeout value must be greater than 0! Given value: "\r
+ + timeOutInHours);\r
}\r
+ this.timeOutInHours = timeOutInHours;\r
}\r
\r
boolean hasCompleted(JobDirectory jd) {\r
return ((System.currentTimeMillis() - jd.jobdir.lastModified()) / (1000 * 60 * 60)) > timeOutInHours;\r
}\r
\r
- public StatProcessor getStats() {\r
+ StatProcessor getStats() {\r
return new StatProcessor(stats);\r
}\r
\r
- public void writeStatToDB() throws SQLException {\r
+ void writeStatToDB() throws SQLException {\r
Set<JobStat> rjobs = new HashSet<JobStat>(stats);\r
StatDB statdb = new StatDB();\r
log.debug("Removing records that has already been recorded");\r
*/\r
\r
/**\r
- * \r
- * @param args\r
- * @throws IOException\r
- * @throws SQLException\r
+ * Not in use\r
*/\r
public static void main(String[] args) throws IOException, SQLException {\r
\r
File jobdir;\r
Map<String, File> files = new HashMap<String, File>();\r
\r
- public JobDirectory(File directory) {\r
+ JobDirectory(File directory) {\r
this.jobdir = directory;\r
for (File f : jobdir.listFiles()) {\r
files.put(f.getName(), f);\r
}\r
}\r
\r
- public boolean hasStatus(JobStatus status) {\r
+ boolean hasStatus(JobStatus status) {\r
return files.containsKey(status.toString());\r
}\r
\r
clustjobId = FileUtil.readFileToString(jobid);\r
}\r
} catch (IOException ioe) {\r
- ioe.printStackTrace();\r
- // TODO LOG\r
+ log.error(\r
+ "IO Exception while reading the content of JOBID file for job "\r
+ + jobid, ioe);\r
}\r
return clustjobId.trim();\r
}\r
return false;\r
return true;\r
}\r
+ }\r
\r
+ private void collectStatistics() {\r
+ File[] files = workDirectory.listFiles(directories);\r
+ for (File file : files) {\r
+ JobDirectory jd = new JobDirectory(file);\r
+ JobStat jstat = jd.getJobStat();\r
+ // Do not record stats on the job that has not completed yet\r
+ if (hasCompleted(jd)) {\r
+ stats.add(jstat);\r
+ } else {\r
+ log.debug("Skipping the job: " + jstat);\r
+ log.debug("As it has not completed yet");\r
+ }\r
+ // System.out.println(jd.getJobStat().getJobReportTabulated());\r
+ }\r
}\r
\r
@Override\r
public void run() {\r
log.info("Started updating statistics at " + new Date());\r
\r
+ collectStatistics();\r
+\r
StatProcessor local_stats = getStats();\r
log.info("Found " + local_stats.getJobNumber() + " jobs!");\r
try {\r
}\r
log.info("Finished updating statistics at " + new Date());\r
}\r
-\r
}\r