Disembl and Jronn web services work. Modified to produce raw scores Globplot script...

[jabaws.git] / webservices / compbio / ws / client / IOHelper.java

diff --git a/webservices/compbio/ws/client/IOHelper.java b/webservices/compbio/ws/client/IOHelper.java
index 79357e5..414af9c 100644 (file)
--- a/webservices/compbio/ws/client/IOHelper.java
+++ b/webservices/compbio/ws/client/IOHelper.java
@@ -10,8 +10,9 @@ import java.io.FileReader;
 import java.io.IOException;\r
 import java.io.OutputStream;\r
 import java.util.ArrayList;\r
+import java.util.HashSet;\r
 import java.util.List;\r
-import java.util.Set;\r
+import java.util.Map;\r
 \r
 import compbio.data.sequence.Alignment;\r
 import compbio.data.sequence.ClustalAlignmentUtil;\r
@@ -118,9 +119,13 @@ public class IOHelper {
         * @param result\r
         *            the AACon scores to output\r
         */\r
-       static void writeOut(OutputStream outStream, Set<Score> result) {\r
+       static void writeOut(OutputStream outStream,\r
+                       Map<String, HashSet<Score>> result) {\r
                try {\r
-                       Score.write(result, outStream);\r
+                       for (Map.Entry<String, HashSet<Score>> entry : result.entrySet()) {\r
+                               System.out.println(">" + entry.getKey());\r
+                               Score.write(entry.getValue(), outStream);\r
+                       }\r
                } catch (IOException e) {\r
                        System.err\r
                                        .println("Problems writing output file! Stack trace is below: ");\r