Refactoring (renaming) 2 classes: AsyncJobRunner.java -> AsyncClusterRunner.java...

[jabaws.git] / webservices / compbio / ws / client / Jws2Client.java

diff --git a/webservices/compbio/ws/client/Jws2Client.java b/webservices/compbio/ws/client/Jws2Client.java
index dbe999a..4a0b459 100644 (file)
--- a/webservices/compbio/ws/client/Jws2Client.java
+++ b/webservices/compbio/ws/client/Jws2Client.java
@@ -56,6 +56,7 @@ import compbio.data.sequence.ScoreManager;
 import compbio.data.sequence.SequenceUtil;\r
 import compbio.data.sequence.UnknownFileFormatException;\r
 import compbio.metadata.JobSubmissionException;\r
+import compbio.metadata.JobStatus;\r
 import compbio.metadata.Option;\r
 import compbio.metadata.Limit;\r
 import compbio.metadata.Preset;\r
@@ -372,6 +373,8 @@ public class Jws2Client {
                        }\r
                        System.out.println("\n\rcalling predictor.........");\r
                        Thread.sleep(100);\r
+                       JobStatus status = wsproxy.getJobStatus(jobId);\r
+                       System.out.println("\njob " + jobId + " status: " + status);\r
                        scores = wsproxy.getAnnotation(jobId);\r
                } catch (JobSubmissionException e) {\r
                        System.err.println("Exception while submitting job to a web server. Exception details are below:");\r
@@ -460,7 +463,12 @@ public class Jws2Client {
                                jobId = msaws.align(fastalist);\r
                        }\r
                        System.out.println("\ncalling program.........");\r
-                       Thread.sleep(100);\r
+                       long startTime = System.nanoTime();\r
+                       while (JobStatus.RUNNING == msaws.getJobStatus(jobId)) {\r
+                               Thread.sleep(1000);\r
+                               long endTime = System.nanoTime();\r
+                               System.out.println("job " + jobId + " time executing: "+ (endTime - startTime) / 1000000 +" msec, status: " + msaws.getJobStatus(jobId));\r
+                       }\r
                        alignment = msaws.getResult(jobId);\r
                } catch (IOException e) {\r
                        System.err.println("Exception while reading the input file. Check that the input file is a FASTA file! "\r