import java.io.FileInputStream;\r
import java.io.FileOutputStream;\r
import java.io.IOException;\r
-import java.io.OutputStream;\r
import java.io.PrintWriter;\r
import java.io.Writer;\r
import java.net.ConnectException;\r
IOHelper.writeOut(writer, alignment);\r
writer.close();\r
}\r
+ AlignmentMetadata md = alignment.getMetadata();\r
+ System.out.println("Output has been prepared with " + md.getProgram());\r
}\r
}\r
\r
* \r
*/\r
public static void main(String[] args) {\r
-\r
if (args == null) {\r
System.out.println(Constraints.help_text);\r
System.exit(1);\r
System.out.println(Constraints.help_text);\r
System.exit(1);\r
}\r
-\r
try {\r
new Jws2Client(args);\r
} catch (IOException e) {\r