import compbio.data.msa.RegistryWS;\r
import compbio.data.msa.SequenceAnnotation;\r
import compbio.data.sequence.Alignment;\r
+import compbio.data.sequence.AlignmentMetadata;\r
import compbio.data.sequence.JpredAlignment;\r
import compbio.data.sequence.FastaSequence;\r
import compbio.data.sequence.ScoreManager;\r
IOHelper.writeOut(writer, alignment);\r
writer.close();\r
}\r
+ AlignmentMetadata md = alignment.getMetadata();\r
+ System.out.println("Output has been prepared with " + md.getProgram());\r
}\r
}\r
\r