Services class refactored to get rid of engines and runners dependencies.

[jabaws.git] / webservices / compbio / ws / client / ServicesUtil.java

diff --git a/webservices/compbio/ws/client/ServicesUtil.java b/webservices/compbio/ws/client/ServicesUtil.java
new file mode 100644 (file)
index 0000000..2646a09
--- /dev/null
+++ b/webservices/compbio/ws/client/ServicesUtil.java
@@ -0,0 +1,96 @@
+package compbio.ws.client;\r
+\r
+import java.io.File;\r
+\r
+import compbio.engine.client.ConfExecutable;\r
+import compbio.engine.client.Executable;\r
+import compbio.runner.conservation.AACon;\r
+import compbio.runner.disorder.Disembl;\r
+import compbio.runner.disorder.GlobPlot;\r
+import compbio.runner.disorder.IUPred;\r
+import compbio.runner.disorder.Jronn;\r
+import compbio.runner.msa.ClustalO;\r
+import compbio.runner.msa.ClustalW;\r
+import compbio.runner.msa.Mafft;\r
+import compbio.runner.msa.Muscle;\r
+import compbio.runner.msa.Probcons;\r
+import compbio.runner.msa.Tcoffee;\r
+\r
+public class ServicesUtil {\r
+\r
+       public static Services getServiceByRunner(\r
+                       Class<Executable<?>> runnerClassName) {\r
+               assert runnerClassName != null;\r
+               String sname = runnerClassName.getSimpleName().toLowerCase();\r
+               for (Services service : Services.values()) {\r
+                       if (service.toString().toLowerCase().contains(sname)) {\r
+                               return service;\r
+                       }\r
+               }\r
+               return null;\r
+       }\r
+\r
+       public static Class<? extends Executable<?>> getServiceImpl(Services service) {\r
+               switch (service) {\r
+                       case AAConWS :\r
+                               return AACon.class;\r
+                       case ClustalOWS :\r
+                               return ClustalO.class;\r
+                       case ClustalWS :\r
+                               return ClustalW.class;\r
+                       case MafftWS :\r
+                               return Mafft.class;\r
+                       case MuscleWS :\r
+                               return Muscle.class;\r
+                       case TcoffeeWS :\r
+                               return Tcoffee.class;\r
+                       case ProbconsWS :\r
+                               return Probcons.class;\r
+                       case DisemblWS :\r
+                               return Disembl.class;\r
+                       case GlobPlotWS :\r
+                               return GlobPlot.class;\r
+                       case JronnWS :\r
+                               return Jronn.class;\r
+                       case IUPredWS :\r
+                               return IUPred.class;\r
+                       default :\r
+                               throw new RuntimeException(\r
+                                               "Unknown web service implementation class for service: "\r
+                                                               + service);\r
+               }\r
+       }\r
+\r
+       public static Class<? extends Executable<?>> getRunnerByJobDirectory(\r
+                       File jobdir) {\r
+               Services service = getServiceByRunnerName(getRunnerNameByJobDirectory(jobdir));\r
+               return getServiceImpl(service);\r
+       }\r
+\r
+       private static String getRunnerNameByJobDirectory(File jobdir) {\r
+               String name = jobdir.getName().split("#")[0];\r
+\r
+               if (name.startsWith(ConfExecutable.CLUSTER_TASK_ID_PREFIX)) {\r
+                       assert ConfExecutable.CLUSTER_TASK_ID_PREFIX.length() == 1;\r
+                       name = name.substring(1);\r
+               }\r
+               return name;\r
+       }\r
+\r
+       public static Services getServiceByJobDirectory(File jobdir) {\r
+               return getServiceByRunnerName(getRunnerNameByJobDirectory(jobdir));\r
+       }\r
+\r
+       private static Services getServiceByRunnerName(String name) {\r
+               for (Services service : Services.values()) {\r
+                       String runnerName = getServiceImpl(service).getSimpleName()\r
+                                       .toLowerCase();\r
+                       name = name.trim().toLowerCase();\r
+                       if (name.startsWith(runnerName)) {\r
+                               return service;\r
+                       }\r
+               }\r
+               return null;\r
+       }\r
+\r
+}\r