Refactoring: rename duplicated Util classes

[jabaws.git] / webservices / compbio / ws / server / ClustalWS.java

diff --git a/webservices/compbio/ws/server/ClustalWS.java b/webservices/compbio/ws/server/ClustalWS.java
index ce12c6a..9799bd7 100644 (file)
--- a/webservices/compbio/ws/server/ClustalWS.java
+++ b/webservices/compbio/ws/server/ClustalWS.java
@@ -34,6 +34,7 @@ import compbio.engine.AsyncExecutor;
 import compbio.engine.Configurator;\r
 import compbio.engine.client.ConfiguredExecutable;\r
 import compbio.engine.client.SkeletalExecutable;\r
+import compbio.engine.client.EngineUtil;\r
 import compbio.metadata.ChunkHolder;\r
 import compbio.metadata.JobStatus;\r
 import compbio.metadata.JobSubmissionException;\r
@@ -45,19 +46,16 @@ import compbio.metadata.PresetManager;
 import compbio.metadata.ResultNotAvailableException;\r
 import compbio.metadata.RunnerConfig;\r
 import compbio.metadata.WrongParameterException;\r
-import compbio.runner.Util;\r
+import compbio.runner.RunnerUtil;\r
 import compbio.runner.msa.ClustalW;\r
 \r
 @WebService(endpointInterface = "compbio.data.msa.MsaWS", targetNamespace = JABAService.SERVICE_NAMESPACE, serviceName = "ClustalWS")\r
 public class ClustalWS implements MsaWS<ClustalW> {\r
 \r
        private static Logger log = Logger.getLogger(ClustalWS.class);\r
-\r
-       private static final RunnerConfig<ClustalW> clustalOptions = Util.getSupportedOptions(ClustalW.class);\r
-\r
-       private static final PresetManager<ClustalW> clustalPresets = Util.getPresets(ClustalW.class);\r
-\r
-       private static final LimitsManager<ClustalW> limitMan = compbio.engine.client.Util.getLimits(new ClustalW().getType());\r
+       private static final RunnerConfig<ClustalW> clustalOptions = RunnerUtil.getSupportedOptions(ClustalW.class);\r
+       private static final PresetManager<ClustalW> clustalPresets = RunnerUtil.getPresets(ClustalW.class);\r
+       private static final LimitsManager<ClustalW> limitMan = EngineUtil.getLimits(new ClustalW().getType());\r
 \r
        @Override\r
        public String align(List<FastaSequence> sequences)\r