Refactoring: rename duplicated Util classes

[jabaws.git] / webservices / compbio / ws / server / MafftWS.java

diff --git a/webservices/compbio/ws/server/MafftWS.java b/webservices/compbio/ws/server/MafftWS.java
index 5ee6872..1d02e81 100644 (file)
--- a/webservices/compbio/ws/server/MafftWS.java
+++ b/webservices/compbio/ws/server/MafftWS.java
@@ -34,6 +34,7 @@ import compbio.engine.AsyncExecutor;
 import compbio.engine.Configurator;\r
 import compbio.engine.client.ConfiguredExecutable;\r
 import compbio.engine.client.SkeletalExecutable;\r
+import compbio.engine.client.EngineUtil;\r
 import compbio.metadata.ChunkHolder;\r
 import compbio.metadata.JobStatus;\r
 import compbio.metadata.JobSubmissionException;\r
@@ -45,22 +46,16 @@ import compbio.metadata.PresetManager;
 import compbio.metadata.ResultNotAvailableException;\r
 import compbio.metadata.RunnerConfig;\r
 import compbio.metadata.WrongParameterException;\r
-import compbio.runner.Util;\r
+import compbio.runner.RunnerUtil;\r
 import compbio.runner.msa.Mafft;\r
 \r
 @WebService(endpointInterface = "compbio.data.msa.MsaWS", targetNamespace = JABAService.SERVICE_NAMESPACE, serviceName = "MafftWS")\r
 public class MafftWS implements MsaWS<Mafft> {\r
 \r
        private static Logger log = Logger.getLogger(MafftWS.class);\r
-\r
-       private static final RunnerConfig<Mafft> mafftOptions = Util\r
-                       .getSupportedOptions(Mafft.class);\r
-\r
-       private static final PresetManager<Mafft> mafftPresets = Util\r
-                       .getPresets(Mafft.class);\r
-\r
-       private static final LimitsManager<Mafft> limitMan = compbio.engine.client.Util\r
-                       .getLimits(new Mafft().getType());\r
+       private static final RunnerConfig<Mafft> mafftOptions = RunnerUtil.getSupportedOptions(Mafft.class);\r
+       private static final PresetManager<Mafft> mafftPresets = RunnerUtil.getPresets(Mafft.class);\r
+       private static final LimitsManager<Mafft> limitMan = EngineUtil.getLimits(new Mafft().getType());\r
 \r
        @Override\r
        public String align(List<FastaSequence> sequences)\r