Web services refactoring & bug fixing

[jabaws.git] / webservices / compbio / ws / server / TcoffeeWS.java

diff --git a/webservices/compbio/ws/server/TcoffeeWS.java b/webservices/compbio/ws/server/TcoffeeWS.java
index 889efd8..59b4c19 100644 (file)
--- a/webservices/compbio/ws/server/TcoffeeWS.java
+++ b/webservices/compbio/ws/server/TcoffeeWS.java
@@ -73,6 +73,10 @@ public class TcoffeeWS implements MsaWS<Tcoffee> {
        ConfiguredExecutable<Tcoffee> init(List<FastaSequence> sequences)\r
                        throws JobSubmissionException {\r
                Tcoffee tcoffee = new Tcoffee();\r
+               tcoffee.setInput(SkeletalExecutable.INPUT)\r
+                               .setOutput(SkeletalExecutable.OUTPUT)\r
+                               .setError(SkeletalExecutable.ERROR);\r
+\r
                ConfiguredExecutable<Tcoffee> confCoffee = Configurator\r
                                .configureExecutable(tcoffee, sequences);\r
                if (confCoffee.getExecProvider() == Executable.ExecProvider.Cluster) {\r