Refactoring: rename duplicated Util classes

[jabaws.git] / webservices / compbio / ws / server / TcoffeeWS.java

diff --git a/webservices/compbio/ws/server/TcoffeeWS.java b/webservices/compbio/ws/server/TcoffeeWS.java
index 72291dc..ee1c1c6 100644 (file)
--- a/webservices/compbio/ws/server/TcoffeeWS.java
+++ b/webservices/compbio/ws/server/TcoffeeWS.java
@@ -35,6 +35,7 @@ import compbio.engine.Configurator;
 import compbio.engine.client.ConfiguredExecutable;\r
 import compbio.engine.client.Executable;\r
 import compbio.engine.client.SkeletalExecutable;\r
+import compbio.engine.client.EngineUtil;\r
 import compbio.metadata.ChunkHolder;\r
 import compbio.metadata.JobStatus;\r
 import compbio.metadata.JobSubmissionException;\r
@@ -46,19 +47,16 @@ import compbio.metadata.PresetManager;
 import compbio.metadata.ResultNotAvailableException;\r
 import compbio.metadata.RunnerConfig;\r
 import compbio.metadata.WrongParameterException;\r
-import compbio.runner.Util;\r
+import compbio.runner.RunnerUtil;\r
 import compbio.runner.msa.Tcoffee;\r
 \r
 @WebService(endpointInterface = "compbio.data.msa.MsaWS", targetNamespace = JABAService.SERVICE_NAMESPACE, serviceName = "TcoffeeWS")\r
 public class TcoffeeWS implements MsaWS<Tcoffee> {\r
 \r
        private static Logger log = Logger.getLogger(TcoffeeWS.class);\r
-\r
-       private static final RunnerConfig<Tcoffee> tcoffeeOptions = Util.getSupportedOptions(Tcoffee.class);\r
-\r
-       private static final PresetManager<Tcoffee> tcoffeePresets = Util.getPresets(Tcoffee.class);\r
-\r
-       private static final LimitsManager<Tcoffee> limitMan = compbio.engine.client.Util.getLimits(new Tcoffee().getType());\r
+       private static final RunnerConfig<Tcoffee> tcoffeeOptions = RunnerUtil.getSupportedOptions(Tcoffee.class);\r
+       private static final PresetManager<Tcoffee> tcoffeePresets = RunnerUtil.getPresets(Tcoffee.class);\r
+       private static final LimitsManager<Tcoffee> limitMan = EngineUtil.getLimits(new Tcoffee().getType());\r
 \r
        @Override\r
        public String align(List<FastaSequence> sequences)\r