Refactoring (renaming) 2 classes: AsyncJobRunner.java -> AsyncClusterRunner.java...

[jabaws.git] / webservices / compbio / ws / server / WSUtil.java

diff --git a/webservices/compbio/ws/server/WSUtil.java b/webservices/compbio/ws/server/WSUtil.java
index 835b553..89c7375 100644 (file)
--- a/webservices/compbio/ws/server/WSUtil.java
+++ b/webservices/compbio/ws/server/WSUtil.java
@@ -27,6 +27,7 @@ import org.apache.log4j.Logger;
 \r
 import compbio.data.sequence.FastaSequence;\r
 import compbio.data.sequence.ScoreManager;\r
+import compbio.runner.RunnerUtil;\r
 import compbio.engine.AsyncExecutor;\r
 import compbio.engine.Configurator;\r
 import compbio.engine.ProgressGetter;\r
@@ -100,7 +101,7 @@ public final class WSUtil {
                if (limit != null && limit.isExceeded(sequences)) {\r
                        throw LimitExceededException.newLimitExceeded(limit, sequences);\r
                }\r
-               compbio.runner.RunnerUtil.writeInput(sequences, confExec);\r
+               RunnerUtil.writeInput(sequences, confExec);\r
                AsyncExecutor engine = Configurator.getAsyncEngine(confExec);\r
                String jobId = engine.submitJob(confExec);\r
                reportUsage(confExec, logger);\r
@@ -122,7 +123,7 @@ public final class WSUtil {
                if (limit != null && limit.isExceeded(sequences)) {\r
                        throw LimitExceededException.newLimitExceeded(limit, sequences);\r
                }\r
-               compbio.runner.RunnerUtil.writeInput(sequences, confExec);\r
+               RunnerUtil.writeInput(sequences, confExec);\r
                AsyncExecutor engine = Configurator.getAsyncEngine(confExec);\r
                String jobId = engine.submitJob(confExec);\r
                reportUsage(confExec, log);\r
@@ -139,7 +140,7 @@ public final class WSUtil {
                if (limit != null && limit.isExceeded(sequences)) {\r
                        throw LimitExceededException.newLimitExceeded(limit, sequences);\r
                }\r
-               compbio.runner.RunnerUtil.writeClustalInput(sequences, confExec, '-');\r
+               RunnerUtil.writeClustalInput(sequences, confExec, '-');\r
                AsyncExecutor engine = Configurator.getAsyncEngine(confExec);\r
                String jobId = engine.submitJob(confExec);\r
                reportUsage(confExec, log);\r