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Assign JABAService.V2_SERVICE_NAMESPACE to all new services: JpredWS, RNAalifoldWS...
[jabaws.git] / webservices / compbio / ws / server / resource / JpredWS_schema1.xsd
diff --git a/webservices/compbio/ws/server/resource/JpredWS_schema1.xsd b/webservices/compbio/ws/server/resource/JpredWS_schema1.xsd
deleted file mode 100644 (file)
index e1e8e5f..0000000
--- a/webservices/compbio/ws/server/resource/JpredWS_schema1.xsd
+++ /dev/null
@@ -1,374 +0,0 @@
-<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
-<xs:schema version="1.0" targetNamespace="http://msa.data.compbio/01/01/2010/" xmlns:tns="http://msa.data.compbio/01/01/2010/" xmlns:xs="http://www.w3.org/2001/XMLSchema">
-
-  <xs:element name="JobSubmissionException" type="tns:JobSubmissionException"/>
-
-  <xs:element name="LimitExceededException" type="tns:LimitExceededException"/>
-
-  <xs:element name="ResultNotAvailableException" type="tns:ResultNotAvailableException"/>
-
-  <xs:element name="UnsupportedRuntimeException" type="tns:UnsupportedRuntimeException"/>
-
-  <xs:element name="WrongParameterException" type="tns:WrongParameterException"/>
-
-  <xs:element name="align" type="tns:align"/>
-
-  <xs:element name="alignResponse" type="tns:alignResponse"/>
-
-  <xs:element name="cancelJob" type="tns:cancelJob"/>
-
-  <xs:element name="cancelJobResponse" type="tns:cancelJobResponse"/>
-
-  <xs:element name="customAlign" type="tns:customAlign"/>
-
-  <xs:element name="customAlignResponse" type="tns:customAlignResponse"/>
-
-  <xs:element name="getJobStatus" type="tns:getJobStatus"/>
-
-  <xs:element name="getJobStatusResponse" type="tns:getJobStatusResponse"/>
-
-  <xs:element name="getLimit" type="tns:getLimit"/>
-
-  <xs:element name="getLimitResponse" type="tns:getLimitResponse"/>
-
-  <xs:element name="getLimits" type="tns:getLimits"/>
-
-  <xs:element name="getLimitsResponse" type="tns:getLimitsResponse"/>
-
-  <xs:element name="getPresets" type="tns:getPresets"/>
-
-  <xs:element name="getPresetsResponse" type="tns:getPresetsResponse"/>
-
-  <xs:element name="getResult" type="tns:getResult"/>
-
-  <xs:element name="getResultResponse" type="tns:getResultResponse"/>
-
-  <xs:element name="getRunnerOptions" type="tns:getRunnerOptions"/>
-
-  <xs:element name="getRunnerOptionsResponse" type="tns:getRunnerOptionsResponse"/>
-
-  <xs:element name="limits" type="tns:limitsManager"/>
-
-  <xs:element name="presetAlign" type="tns:presetAlign"/>
-
-  <xs:element name="presetAlignResponse" type="tns:presetAlignResponse"/>
-
-  <xs:element name="presets" type="tns:presetManager"/>
-
-  <xs:element name="pullExecStatistics" type="tns:pullExecStatistics"/>
-
-  <xs:element name="pullExecStatisticsResponse" type="tns:pullExecStatisticsResponse"/>
-
-  <xs:element name="runnerConfig" type="tns:runnerConfig"/>
-
-  <xs:complexType name="align">
-    <xs:sequence>
-      <xs:element name="fastaSequences" type="tns:fastaSequence" minOccurs="0" maxOccurs="unbounded"/>
-    </xs:sequence>
-  </xs:complexType>
-
-  <xs:complexType name="fastaSequence">
-    <xs:sequence>
-      <xs:element name="id" type="xs:string" minOccurs="0"/>
-      <xs:element name="sequence" type="xs:string" minOccurs="0"/>
-    </xs:sequence>
-  </xs:complexType>
-
-  <xs:complexType name="alignResponse">
-    <xs:sequence>
-      <xs:element name="return" type="xs:string" minOccurs="0"/>
-    </xs:sequence>
-  </xs:complexType>
-
-  <xs:complexType name="UnsupportedRuntimeException">
-    <xs:sequence>
-      <xs:element name="message" type="xs:string" minOccurs="0"/>
-    </xs:sequence>
-  </xs:complexType>
-
-  <xs:complexType name="LimitExceededException">
-    <xs:sequence>
-      <xs:element name="actualNumberofSequences" type="xs:int"/>
-      <xs:element name="message" type="xs:string" minOccurs="0"/>
-      <xs:element name="numberOfSequencesAllowed" type="xs:int"/>
-      <xs:element name="sequenceLenghtActual" type="xs:int"/>
-      <xs:element name="sequenceLenghtAllowed" type="xs:int"/>
-    </xs:sequence>
-  </xs:complexType>
-
-  <xs:complexType name="JobSubmissionException">
-    <xs:sequence>
-      <xs:element name="message" type="xs:string" minOccurs="0"/>
-    </xs:sequence>
-  </xs:complexType>
-
-  <xs:complexType name="customAlign">
-    <xs:sequence>
-      <xs:element name="fastaSequences" type="tns:fastaSequence" minOccurs="0" maxOccurs="unbounded"/>
-      <xs:element name="options" type="tns:option" minOccurs="0" maxOccurs="unbounded"/>
-    </xs:sequence>
-  </xs:complexType>
-
-  <xs:complexType name="option">
-    <xs:sequence>
-      <xs:element name="description" type="xs:string"/>
-      <xs:element name="optionNames" type="xs:string" maxOccurs="unbounded"/>
-      <xs:element name="name" type="xs:string"/>
-      <xs:element name="furtherDetails" type="xs:string" minOccurs="0"/>
-      <xs:element name="defaultValue" type="xs:string" minOccurs="0"/>
-    </xs:sequence>
-    <xs:attribute name="isRequired" type="xs:boolean" use="required"/>
-  </xs:complexType>
-
-  <xs:complexType name="customAlignResponse">
-    <xs:sequence>
-      <xs:element name="return" type="xs:string" minOccurs="0"/>
-    </xs:sequence>
-  </xs:complexType>
-
-  <xs:complexType name="WrongParameterException">
-    <xs:sequence>
-      <xs:element name="message" type="xs:string" minOccurs="0"/>
-    </xs:sequence>
-  </xs:complexType>
-
-  <xs:complexType name="pullExecStatistics">
-    <xs:sequence>
-      <xs:element name="jobId" type="xs:string" minOccurs="0"/>
-      <xs:element name="position" type="xs:long"/>
-    </xs:sequence>
-  </xs:complexType>
-
-  <xs:complexType name="pullExecStatisticsResponse">
-    <xs:sequence>
-      <xs:element name="return" type="tns:chunkHolder" minOccurs="0"/>
-    </xs:sequence>
-  </xs:complexType>
-
-  <xs:complexType name="chunkHolder">
-    <xs:sequence>
-      <xs:element name="chunk" type="xs:string" minOccurs="0"/>
-      <xs:element name="position" type="xs:long"/>
-    </xs:sequence>
-  </xs:complexType>
-
-  <xs:complexType name="presetAlign">
-    <xs:sequence>
-      <xs:element name="fastaSequences" type="tns:fastaSequence" minOccurs="0" maxOccurs="unbounded"/>
-      <xs:element name="preset" type="tns:preset" minOccurs="0"/>
-    </xs:sequence>
-  </xs:complexType>
-
-  <xs:complexType name="preset">
-    <xs:sequence>
-      <xs:element name="name" type="xs:string"/>
-      <xs:element name="description" type="xs:string" minOccurs="0"/>
-      <xs:element name="optlist" minOccurs="0">
-        <xs:complexType>
-          <xs:sequence>
-            <xs:element name="option" type="xs:string" maxOccurs="unbounded"/>
-          </xs:sequence>
-        </xs:complexType>
-      </xs:element>
-    </xs:sequence>
-  </xs:complexType>
-
-  <xs:complexType name="presetAlignResponse">
-    <xs:sequence>
-      <xs:element name="return" type="xs:string" minOccurs="0"/>
-    </xs:sequence>
-  </xs:complexType>
-
-  <xs:complexType name="getPresets">
-    <xs:sequence/>
-  </xs:complexType>
-
-  <xs:complexType name="getPresetsResponse">
-    <xs:sequence>
-      <xs:element name="return" type="tns:presetManager" minOccurs="0"/>
-    </xs:sequence>
-  </xs:complexType>
-
-  <xs:complexType name="presetManager">
-    <xs:sequence>
-      <xs:element name="runnerClassName" type="xs:string"/>
-      <xs:element name="preset" type="tns:preset" maxOccurs="unbounded"/>
-    </xs:sequence>
-  </xs:complexType>
-
-  <xs:complexType name="getLimits">
-    <xs:sequence/>
-  </xs:complexType>
-
-  <xs:complexType name="getLimitsResponse">
-    <xs:sequence>
-      <xs:element name="return" type="tns:limitsManager" minOccurs="0"/>
-    </xs:sequence>
-  </xs:complexType>
-
-  <xs:complexType name="limitsManager">
-    <xs:sequence>
-      <xs:element name="runnerClassName" type="xs:string" minOccurs="0"/>
-      <xs:element name="limit" type="tns:limit" nillable="true" minOccurs="0" maxOccurs="unbounded"/>
-    </xs:sequence>
-  </xs:complexType>
-
-  <xs:complexType name="limit">
-    <xs:sequence>
-      <xs:element name="preset" type="xs:string" minOccurs="0"/>
-      <xs:element name="seqNumber" type="xs:int"/>
-      <xs:element name="seqLength" type="xs:int"/>
-    </xs:sequence>
-    <xs:attribute name="isDefault" type="xs:boolean" use="required"/>
-  </xs:complexType>
-
-  <xs:complexType name="getLimit">
-    <xs:sequence>
-      <xs:element name="presetName" type="xs:string" minOccurs="0"/>
-    </xs:sequence>
-  </xs:complexType>
-
-  <xs:complexType name="getLimitResponse">
-    <xs:sequence>
-      <xs:element name="return" type="tns:limit" minOccurs="0"/>
-    </xs:sequence>
-  </xs:complexType>
-
-  <xs:complexType name="cancelJob">
-    <xs:sequence>
-      <xs:element name="jobId" type="xs:string" minOccurs="0"/>
-    </xs:sequence>
-  </xs:complexType>
-
-  <xs:complexType name="cancelJobResponse">
-    <xs:sequence>
-      <xs:element name="return" type="xs:boolean"/>
-    </xs:sequence>
-  </xs:complexType>
-
-  <xs:complexType name="getRunnerOptions">
-    <xs:sequence/>
-  </xs:complexType>
-
-  <xs:complexType name="getRunnerOptionsResponse">
-    <xs:sequence>
-      <xs:element name="return" type="tns:runnerConfig" minOccurs="0"/>
-    </xs:sequence>
-  </xs:complexType>
-
-  <xs:complexType name="runnerConfig">
-    <xs:sequence>
-      <xs:element name="options" type="tns:option" nillable="true" minOccurs="0" maxOccurs="unbounded"/>
-      <xs:element name="parameters" type="tns:parameter" nillable="true" minOccurs="0" maxOccurs="unbounded"/>
-      <xs:element name="prmSeparator" type="xs:string" minOccurs="0"/>
-      <xs:element name="runnerClassName" type="xs:string"/>
-    </xs:sequence>
-  </xs:complexType>
-
-  <xs:complexType name="parameter">
-    <xs:complexContent>
-      <xs:extension base="tns:option">
-        <xs:sequence>
-          <xs:element name="possibleValues" type="xs:string" minOccurs="0" maxOccurs="unbounded"/>
-          <xs:element name="validValue" type="tns:valueConstrain" minOccurs="0"/>
-        </xs:sequence>
-      </xs:extension>
-    </xs:complexContent>
-  </xs:complexType>
-
-  <xs:complexType name="valueConstrain">
-    <xs:sequence>
-      <xs:element name="type" type="tns:type"/>
-      <xs:element name="max" type="xs:string" minOccurs="0"/>
-      <xs:element name="min" type="xs:string" minOccurs="0"/>
-    </xs:sequence>
-  </xs:complexType>
-
-  <xs:complexType name="getResult">
-    <xs:sequence>
-      <xs:element name="jobId" type="xs:string" minOccurs="0"/>
-    </xs:sequence>
-  </xs:complexType>
-
-  <xs:complexType name="getResultResponse">
-    <xs:sequence>
-      <xs:element name="return" type="tns:alignment" minOccurs="0"/>
-    </xs:sequence>
-  </xs:complexType>
-
-  <xs:complexType name="alignment">
-    <xs:sequence>
-      <xs:element name="metadata" type="tns:alignmentMetadata" minOccurs="0"/>
-      <xs:element name="sequences" type="tns:fastaSequence" nillable="true" minOccurs="0" maxOccurs="unbounded"/>
-    </xs:sequence>
-  </xs:complexType>
-
-  <xs:complexType name="alignmentMetadata">
-    <xs:sequence>
-      <xs:element name="program" type="tns:program" minOccurs="0"/>
-      <xs:element name="gapchar" type="xs:unsignedShort"/>
-    </xs:sequence>
-  </xs:complexType>
-
-  <xs:complexType name="jpredAlignment">
-    <xs:complexContent>
-      <xs:extension base="tns:alignment">
-        <xs:sequence/>
-      </xs:extension>
-    </xs:complexContent>
-  </xs:complexType>
-
-  <xs:complexType name="ResultNotAvailableException">
-    <xs:sequence>
-      <xs:element name="message" type="xs:string" minOccurs="0"/>
-    </xs:sequence>
-  </xs:complexType>
-
-  <xs:complexType name="getJobStatus">
-    <xs:sequence>
-      <xs:element name="jobId" type="xs:string" minOccurs="0"/>
-    </xs:sequence>
-  </xs:complexType>
-
-  <xs:complexType name="getJobStatusResponse">
-    <xs:sequence>
-      <xs:element name="return" type="tns:jobStatus" minOccurs="0"/>
-    </xs:sequence>
-  </xs:complexType>
-
-  <xs:simpleType name="type">
-    <xs:restriction base="xs:string">
-      <xs:enumeration value="Integer"/>
-      <xs:enumeration value="Float"/>
-    </xs:restriction>
-  </xs:simpleType>
-
-  <xs:simpleType name="program">
-    <xs:restriction base="xs:string">
-      <xs:enumeration value="CLUSTAL"/>
-      <xs:enumeration value="ClustalO"/>
-      <xs:enumeration value="Mafft"/>
-      <xs:enumeration value="Muscle"/>
-      <xs:enumeration value="Tcoffee"/>
-      <xs:enumeration value="Probcons"/>
-      <xs:enumeration value="MSAprobs"/>
-      <xs:enumeration value="GLprobs"/>
-      <xs:enumeration value="Jpred"/>
-    </xs:restriction>
-  </xs:simpleType>
-
-  <xs:simpleType name="jobStatus">
-    <xs:restriction base="xs:string">
-      <xs:enumeration value="PENDING"/>
-      <xs:enumeration value="RUNNING"/>
-      <xs:enumeration value="CANCELLED"/>
-      <xs:enumeration value="FINISHED"/>
-      <xs:enumeration value="FAILED"/>
-      <xs:enumeration value="UNDEFINED"/>
-      <xs:enumeration value="STARTED"/>
-      <xs:enumeration value="SUBMITTED"/>
-      <xs:enumeration value="COLLECTED"/>
-    </xs:restriction>
-  </xs:simpleType>
-</xs:schema>
-