git://source.jalview.org / jabaws.git / blobdiff
? search:
summary | shortlog | log | commit | commitdiff | tree
raw | inline | side by side
relocate pre-compiled executables from binaries folder
[jabaws.git] / website / archive / binaries / linux_x64 / fasta34 / Makefile.nm_pcom
diff --git a/website/archive/binaries/linux_x64/fasta34/Makefile.nm_pcom b/website/archive/binaries/linux_x64/fasta34/Makefile.nm_pcom
new file mode 100644 (file)
index 0000000..1c9814e
--- /dev/null
+++ b/website/archive/binaries/linux_x64/fasta34/Makefile.nm_pcom
@@ -0,0 +1,205 @@
+
+SHOWBESTC = mshowbest.c
+SHOWALIGN = mshowalign
+MWH = mw.h 
+MWHP = mw.h
+
+TPROGS = ssearch34_t.exe ssearch34sse2_t.exe fasta34_t.exe fasts34_t.exe fastx34_t.exe tfastx34_t.exe fasty34_t.exe tfasty34_t.exe tfasts34_t.exe fastm34_t.exe fastf34_t.exe tfastf34_t.exe prss34_t.exe prss34sse2_t.exe prfx34_t.exe
+
+SPROGS = fasta34.exe ssearch34.exe ssearch34sse2.exe fasts34.exe fastx34.exe tfastx34.exe fasty34.exe tfasty34.exe tfasts34.exe fastm34.exe tfastm34.exe prss34.exe prss34sse2.exe prfx34.exe fastf34.exe tfastf34.exe
+
+MAPROGS = map_db.exe
+
+XTPROGS = fastx34_t.exe tfastx34_t.exe fasty34_t.exe tfasty34_t.exe
+XPROGS = fastx34.exe tfastx34.exe .exe fasty34 tfasty34.exe
+
+PROGS = $(SPROGS) $(TPROGS)
+
+all : $(PROGS)
+
+tall: $(TPROGS)
+
+sall: $(SPROGS)
+
+xall: $(XTPROGS) $(XPROGS) $(ZTPROGS) $(ZPROGS) 
+
+clean-up:
+       del *.obj $(PROGS)
+
+install: $(PROGS)
+       copy $(PROGS) $(XDIR)
+
+sinstall: $(SPROGS)
+       copy $(SPROGS) $(XDIR)
+
+tinstall: $(TPROGS)
+       cp $(TPROGS) $(XDIR)
+
+fasta34.exe : $(COMP_LIBO) compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_fa.obj scaleswn.obj karlin.obj $(DROPNFA_O) $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj $(NRAND).obj url_subs.obj getopt.obj
+       $(CL) /Fefasta34.exe $(COMP_LIBO) compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_fa.obj $(DROPNFA_O) scaleswn.obj karlin.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj url_subs.obj $(NRAND).obj getopt.obj
+
+fastx34.exe : $(COMP_LIBO) compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_fx.obj scaleswn.obj karlin.obj drop_fx.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj faatran.obj url_subs.obj $(NRAND).obj getopt.obj
+       $(CL) /Fefastx34.exe $(COMP_LIBO) compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_fx.obj drop_fx.obj scaleswn.obj karlin.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj faatran.obj url_subs.obj $(NRAND).obj getopt.obj
+
+fasty34.exe : $(COMP_LIBO) compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_fy.obj scaleswn.obj karlin.obj drop_fz.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj faatran.obj url_subs.obj $(NRAND).obj getopt.obj
+       $(CL) /Fefasty34.exe $(COMP_LIBO) compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_fy.obj drop_fz.obj scaleswn.obj karlin.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj faatran.obj url_subs.obj $(NRAND).obj getopt.obj
+
+fastf34.exe : $(COMP_LIBO) compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_ff.obj scaleswts.obj last_tat.obj tatstats_ff.obj karlin.obj drop_ff.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj $(NRAND).obj url_subs.obj getopt.obj
+       $(CL) /Fefastf34.exe $(COMP_LIBO) compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_ff.obj drop_ff.obj scaleswts.obj last_tat.obj tatstats_ff.obj karlin.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj $(NRAND).obj url_subs.obj getopt.obj
+
+fastf34u : $(COMP_LIBO) compacc.obj showun.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_ff.obj scaleswtf.obj karlin.obj drop_ff.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj $(NRAND).obj url_subs.obj getopt.obj
+       $(CL) /Fefastf34u.exe $(COMP_LIBO) compacc.obj showun.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_ff.obj drop_ff.obj scaleswtf.obj karlin.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj $(NRAND).obj url_subs.obj getopt.obj
+
+fastf34s : $(COMP_LIBO) compacc.obj showsum.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_ff.obj scaleswtf.obj karlin.obj drop_ff.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj $(NRAND).obj url_subs.obj getopt.obj
+       $(CL) /Fefastf34s.exe $(COMP_LIBO) compacc.obj showsum.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_ff.obj drop_ff.obj scaleswtf.obj karlin.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj $(NRAND).obj url_subs.obj getopt.obj
+
+fasts34.exe : $(COMP_LIBO) compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_fs.obj scaleswts.obj last_tat.obj tatstats_fs.obj karlin.obj drop_fs.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj $(NRAND).obj url_subs.obj getopt.obj
+       $(CL) /Fefasts34.exe $(COMP_LIBO) compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_fs.obj drop_fs.obj scaleswts.obj last_tat.obj tatstats_fs.obj karlin.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj $(NRAND).obj url_subs.obj getopt.obj
+
+fastm34.exe : $(COMP_LIBO) compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_fm.obj scaleswts.obj last_tat.obj tatstats_fm.obj karlin.obj drop_fm.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj $(NRAND).obj url_subs.obj getopt.obj
+       $(CL) /Fefastm34.exe $(COMP_LIBO) compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_fm.obj drop_fm.obj scaleswts.obj last_tat.obj tatstats_fm.obj karlin.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj $(NRAND).obj url_subs.obj getopt.obj
+
+tfastx34.exe : $(COMP_LIBO) compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_tfx.obj scaleswn.obj karlin.obj drop_tfx.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj faatran.obj url_subs.obj $(NRAND).obj getopt.obj
+       $(CL) /Fetfastx34.exe $(COMP_LIBO) compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_tfx.obj drop_tfx.obj scaleswn.obj karlin.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj faatran.obj url_subs.obj $(NRAND).obj getopt.obj
+
+tfasty34.exe : $(COMP_LIBO) compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_tfy.obj scaleswn.obj karlin.obj drop_tfz.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj faatran.obj url_subs.obj $(NRAND).obj getopt.obj
+       $(CL) /Fetfasty34.exe $(COMP_LIBO) compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_tfy.obj drop_tfz.obj scaleswn.obj karlin.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj faatran.obj url_subs.obj $(NRAND).obj getopt.obj
+
+tfastf34.exe : $(COMP_LIBO) compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_tf.obj scaleswtf.obj last_tat.obj tatstats_ff.obj karlin.obj drop_tff.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj faatran.obj $(NRAND).obj url_subs.obj getopt.obj
+       $(CL) /Fetfastf34.exe $(COMP_LIBO) compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_tf.obj drop_tff.obj scaleswtf.obj last_tat.obj tatstats_ff.obj karlin.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj faatran.obj $(NRAND).obj url_subs.obj getopt.obj
+
+tfastf34s : $(COMP_LIBO) compacc.obj showsum.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_tf.obj scaleswtf.obj karlin.obj drop_tff.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj faatran.obj $(NRAND).obj url_subs.obj getopt.obj
+       $(CL) /Fetfastf34s.exe $(COMP_LIBO) compacc.obj showsum.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_tf.obj drop_tff.obj scaleswtf.obj karlin.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj faatran.obj $(NRAND).obj url_subs.obj getopt.obj
+
+tfasts34.exe : $(COMP_LIBO) compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_tfs.obj scaleswts.obj tatstats_fs.obj last_tat.obj karlin.obj drop_tfs.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj faatran.obj $(NRAND).obj url_subs.obj getopt.obj
+       $(CL) /Fetfasts34.exe $(COMP_LIBO) compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_tfs.obj drop_tfs.obj scaleswts.obj tatstats_fs.obj last_tat.obj karlin.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj faatran.obj $(NRAND).obj url_subs.obj getopt.obj
+
+tfastm34.exe : $(COMP_LIBO) compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_tfm.obj scaleswts.obj tatstats_fm.obj last_tat.obj karlin.obj drop_tfm.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj faatran.obj $(NRAND).obj url_subs.obj getopt.obj
+       $(CL) /Fetfastm34.exe $(COMP_LIBO) compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_tfm.obj drop_tfm.obj scaleswts.obj tatstats_fm.obj last_tat.obj karlin.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj faatran.obj $(NRAND).obj url_subs.obj getopt.obj
+
+ssearch34.exe : $(COMP_LIBO) compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_sw.obj scaleswn.obj karlin.obj $(DROPGSW_O) $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj url_subs.obj $(NRAND).obj pssm_asn_subs.obj getopt.obj
+       $(CL) /Fessearch34.exe $(COMP_LIBO) compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_sw.obj $(DROPGSW_O) scaleswn.obj karlin.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj url_subs.obj $(NRAND).obj pssm_asn_subs.obj getopt.obj
+
+ssearch34sse2.exe : $(COMP_LIBO) compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_sw.obj scaleswn.obj karlin.obj $(DROPGSW_SSE2_O) $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj url_subs.obj $(NRAND).obj pssm_asn_subs.obj getopt.obj
+       $(CL) /Fessearch34sse2.exe $(COMP_LIBO) compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_sw.obj $(DROPGSW_SSE2_O) scaleswn.obj karlin.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj url_subs.obj $(NRAND).obj pssm_asn_subs.obj getopt.obj
+
+osearch34.exe : $(COMP_LIBO) compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_ssw.obj scaleswn.obj karlin.obj dropnsw.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj url_subs.obj $(NRAND).obj getopt.obj
+       $(CL) /Feosearch34.exe $(COMP_LIBO) compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_ssw.obj dropnsw.obj scaleswn.obj karlin.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj url_subs.obj $(NRAND).obj getopt.obj
+
+usearch34.exe : $(COMP_LIBO) compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_sw.obj scaleswn.obj karlin.obj dropnsw.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj url_subs.obj $(NRAND).obj getopt.obj
+       $(CL) /Feusearch34.exe $(COMP_LIBO) compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_sw.obj dropnsw.obj scaleswn.obj karlin.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj url_subs.obj $(NRAND).obj getopt.obj
+
+prss34.exe : rcomp_lib.obj compacc.obj htime.obj apam.obj doinit.obj init_rss.obj scaleswn.obj karlin.obj $(DROPRSS_O) llgetaa.obj showbest.obj mshowalign.obj c_dispn.obj lib_sel.obj url_subs.obj $(NRAND).obj pssm_asn_subs.obj
+       $(CL) /Feprss34.exe rcomp_lib.obj compacc.obj htime.obj apam.obj doinit.obj init_rss.obj $(DROPRSS_O) scaleswn.obj karlin.obj llgetaa.obj showbest.obj mshowalign.obj c_dispn.obj lib_sel.obj url_subs.obj $(NRAND).obj pssm_asn_subs.obj getopt.obj
+
+prss34sse2.exe : rcomp_lib.obj compacc.obj htime.obj apam.obj doinit.obj init_rss.obj scaleswn.obj karlin.obj $(DROPRSS_SSE2_O) llgetaa.obj showbest.obj mshowalign.obj c_dispn.obj lib_sel.obj url_subs.obj $(NRAND).obj pssm_asn_subs.obj
+       $(CL) /Feprss34sse2.exe rcomp_lib.obj compacc.obj htime.obj apam.obj doinit.obj init_rss.obj $(DROPRSS_SSE2_O) scaleswn.obj karlin.obj llgetaa.obj showbest.obj mshowalign.obj c_dispn.obj lib_sel.obj url_subs.obj $(NRAND).obj pssm_asn_subs.obj getopt.obj
+
+prfx34.exe : rcomp_lib.obj compacc.obj htime.obj apam.obj doinit.obj init_rfx.obj scaleswn.obj karlin.obj drop_fx.obj llgetaa.obj showbest.obj mshowalign.obj c_dispn.obj lib_sel.obj url_subs.obj $(NRAND).obj faatran.obj
+       $(CL) /Feprfx34.exe rcomp_lib.obj compacc.obj htime.obj apam.obj doinit.obj init_rfx.obj drop_fx.obj scaleswn.obj karlin.obj llgetaa.obj showbest.obj mshowalign.obj c_dispn.obj lib_sel.obj faatran.obj url_subs.obj $(NRAND).obj getopt.obj
+
+prss34o : rcomp_lib.obj compacc.obj htime.obj apam.obj doinit.obj init_rss.obj scaleswn.obj karlin.obj $(DROPRSS_O) llgetaa.obj showrss.obj lib_sel.obj $(NRAND).obj pssm_asn_subs.obj
+       $(CL) /Feprss34o.exe rcomp_lib.obj compacc.obj htime.obj apam.obj doinit.obj init_rss.obj $(DROPRSS_O) scaleswn.obj karlin.obj llgetaa.obj showrss.obj lib_sel.obj $(NRAND).obj pssm_asn_subs.obj getopt.obj
+
+prfx34o : rcomp_lib.obj compacc.obj htime.obj apam.obj doinit.obj init_rfx.obj scaleswn.obj karlin.obj drop_fx.obj llgetaa.obj showrss.obj lib_sel.obj $(NRAND).obj faatran.obj
+       $(CL) /Feprfx34o.exe rcomp_lib.obj compacc.obj htime.obj apam.obj doinit.obj init_rfx.obj drop_fx.obj scaleswn.obj karlin.obj llgetaa.obj showrss.obj lib_sel.obj faatran.obj $(NRAND).obj getopt.obj
+
+ssearch34_t.exe : $(COMP_THRO) work_thr.obj $(THR_SUBS).obj compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_sw.obj scaleswn.obj karlin.obj $(DROPGSW_O) $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj url_subs.obj $(NRAND).obj pssm_asn_subs.obj getopt.obj
+       $(CL) /Fessearch34_t.exe $(COMP_THRO) work_thr.obj $(THR_SUBS).obj compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_sw.obj $(DROPGSW_O) scaleswn.obj karlin.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj url_subs.obj $(NRAND).obj pssm_asn_subs.obj getopt.obj $(THR_LIBS)
+
+ssearch34sse2_t.exe : $(COMP_THRO) work_thr.obj $(THR_SUBS).obj compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_sw.obj scaleswn.obj karlin.obj $(DROPGSW_SSE2_O) $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj url_subs.obj $(NRAND).obj pssm_asn_subs.obj getopt.obj
+       $(CL) /Fessearch34sse2_t.exe $(COMP_THRO) work_thr.obj $(THR_SUBS).obj compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_sw.obj $(DROPGSW_SSE2_O) scaleswn.obj karlin.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj url_subs.obj $(NRAND).obj pssm_asn_subs.obj getopt.obj $(THR_LIBS)
+
+osearch34_t.exe : $(COMP_THRO) work_thr.obj $(THR_SUBS).obj compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_sw.obj scaleswn.obj karlin.obj dropnsw.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj url_subs.obj $(NRAND).obj getopt.obj
+       $(CL) /Feosearch34_t.exe $(COMP_THRO) work_thr.obj $(THR_SUBS).obj compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_sw.obj dropnsw.obj scaleswn.obj karlin.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj url_subs.obj $(NRAND).obj getopt.obj $(THR_LIBS)
+
+usearch34_t.exe : $(COMP_THRO) work_thr.obj $(THR_SUBS).obj compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_sw.obj scaleswn.obj karlin.obj dropnsw.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj url_subs.obj $(NRAND).obj getopt.obj
+       $(CL) /Feusearch34_t.exe $(COMP_THRO) work_thr.obj $(THR_SUBS).obj compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_sw.obj dropnsw.obj scaleswn.obj karlin.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj url_subs.obj $(NRAND).obj getopt.obj $(THR_LIBS)
+
+fasta34_t.exe : $(COMP_THRO) work_thr.obj $(THR_SUBS).obj compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_fa.obj scaleswn.obj karlin.obj $(DROPNFA_O) $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj url_subs.obj $(NRAND).obj getopt.obj
+       $(CL) /Fefasta34_t.exe $(COMP_THRO) work_thr.obj $(THR_SUBS).obj compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_fa.obj $(DROPNFA_O) scaleswn.obj karlin.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj url_subs.obj $(NRAND).obj getopt.obj $(THR_LIBS)
+
+fasta34s_t.exe : $(COMP_THRO) work_thr.obj $(THR_SUBS).obj compacc.obj showsum.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_fa.obj scaleswn.obj karlin.obj $(DROPNFA_O) $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj url_subs.obj $(NRAND).obj getopt.obj
+       $(CL) /Fefasta34s_t.exe $(COMP_THRO) work_thr.obj $(THR_SUBS).obj compacc.obj showsum.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_fa.obj $(DROPNFA_O) scaleswn.obj karlin.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj url_subs.obj $(NRAND).obj getopt.obj $(THR_LIBS)
+
+fasta34u_t.exe : $(COMP_THRO) work_thr.obj $(THR_SUBS).obj compacc.obj showun.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_fa.obj scaleswn.obj karlin.obj $(DROPNFA_O) $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj $(NRAND).obj url_subs.obj getopt.obj
+       $(CL) /Fefasta34u_t.exe $(COMP_THRO) work_thr.obj $(THR_SUBS).obj compacc.obj showun.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_fa.obj $(DROPNFA_O) scaleswn.obj karlin.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj $(NRAND).obj url_subs.obj getopt.obj $(THR_LIBS)
+
+fasta34r_t.exe : $(COMP_THRO) work_thr.obj $(THR_SUBS).obj compacc.obj showrel.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_fa.obj scaleswn.obj karlin.obj $(DROPNFA_O) $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj $(NRAND).obj url_subs.obj getopt.obj
+       $(CL) /Fefasta34r_t.exe $(COMP_THRO) work_thr.obj $(THR_SUBS).obj compacc.obj showrel.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_fa.obj $(DROPNFA_O) scaleswn.obj karlin.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj $(NRAND).obj url_subs.obj getopt.obj $(THR_LIBS)
+
+fastf34_t.exe : $(COMP_THRO) work_thr.obj $(THR_SUBS).obj compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_ff.obj scaleswtf.obj last_tat.obj tatstats_ff.obj karlin.obj drop_ff.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj $(NRAND).obj url_subs.obj getopt.obj
+       $(CL) /Fefastf34_t.exe $(COMP_THRO) work_thr.obj $(THR_SUBS).obj compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_ff.obj drop_ff.obj scaleswtf.obj last_tat.obj tatstats_ff.obj karlin.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj $(NRAND).obj url_subs.obj getopt.obj $(THR_LIBS)
+
+fastf34s_t.exe : $(COMP_THRO) work_thr.obj $(THR_SUBS).obj compacc.obj showsum.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_ff.obj scaleswtf.obj karlin.obj drop_ff.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj $(NRAND).obj url_subs.obj getopt.obj
+       $(CL) /Fefastf34s_t.exe $(COMP_THRO) work_thr.obj $(THR_SUBS).obj compacc.obj showsum.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_ff.obj drop_ff.obj scaleswtf.obj karlin.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj $(NRAND).obj url_subs.obj getopt.obj $(THR_LIBS)
+
+fasts34_t.exe : $(COMP_THRO) work_thr.obj $(THR_SUBS).obj compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_fs.obj scaleswts.obj last_tat.obj tatstats_fs.obj karlin.obj drop_fs.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj $(NRAND).obj url_subs.obj getopt.obj
+       $(CL) /Fefasts34_t.exe $(COMP_THRO) work_thr.obj $(THR_SUBS).obj compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_fs.obj drop_fs.obj scaleswts.obj last_tat.obj tatstats_fs.obj karlin.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj $(NRAND).obj url_subs.obj getopt.obj $(THR_LIBS)
+
+fastm34_t.exe : $(COMP_THRO) work_thr.obj $(THR_SUBS).obj compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_fs.obj scaleswts.obj last_tat.obj tatstats_fm.obj karlin.obj drop_fm.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj $(NRAND).obj url_subs.obj getopt.obj
+       $(CL) /Fefastm34_t.exe $(COMP_THRO) work_thr.obj $(THR_SUBS).obj compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_fs.obj drop_fm.obj scaleswts.obj last_tat.obj tatstats_fm.obj karlin.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj $(NRAND).obj url_subs.obj getopt.obj $(THR_LIBS)
+
+fastx34_t.exe : $(COMP_THRO) work_thr.obj $(THR_SUBS).obj compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj c_dispn.obj htime.obj apam.obj doinit.obj init_fx.obj faatran.obj scaleswn.obj karlin.obj drop_fx.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj url_subs.obj $(NRAND).obj getopt.obj
+       $(CL) /Fefastx34_t.exe $(COMP_THRO) work_thr.obj $(THR_SUBS).obj compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_fx.obj drop_fx.obj faatran.obj scaleswn.obj karlin.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj url_subs.obj $(NRAND).obj getopt.obj $(THR_LIBS)
+
+fasty34_t.exe : $(COMP_THRO) work_thr.obj $(THR_SUBS).obj compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj c_dispn.obj htime.obj apam.obj doinit.obj init_fy.obj faatran.obj scaleswn.obj karlin.obj drop_fz.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj url_subs.obj $(NRAND).obj getopt.obj
+       $(CL) /Fefasty34_t.exe $(COMP_THRO) work_thr.obj $(THR_SUBS).obj compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_fy.obj drop_fz.obj faatran.obj scaleswn.obj karlin.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj url_subs.obj $(NRAND).obj getopt.obj $(THR_LIBS)
+
+tfasta34.exe : $(COMP_LIBO) compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_tfa.obj scaleswn.obj karlin.obj $(DROPTFA_O) $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj faatran.obj url_subs.obj $(NRAND).obj getopt.obj
+       $(CL) /Fetfasta34.exe $(COMP_LIBO) compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_tfa.obj $(DROPTFA_O) scaleswn.obj karlin.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj faatran.obj url_subs.obj $(NRAND).obj getopt.obj
+
+tfasta34_t.exe : $(COMP_THRO) work_thr.obj $(THR_SUBS).obj compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj c_dispn.obj htime.obj apam.obj doinit.obj init_tfa.obj scaleswn.obj karlin.obj $(DROPTFA_O) $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj faatran.obj url_subs.obj $(NRAND).obj getopt.obj
+       $(CL) /Fetfasta34_t.exe $(COMP_THRO) work_thr.obj $(THR_SUBS).obj compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_tfa.obj $(DROPTFA_O) scaleswn.obj karlin.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj faatran.obj url_subs.obj $(NRAND).obj getopt.obj $(THR_LIBS)
+
+tfastf34_t.exe : $(COMP_THRO) work_thr.obj $(THR_SUBS).obj compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj c_dispn.obj htime.obj apam.obj doinit.obj init_tf.obj  scaleswtf.obj last_tat.obj tatstats_ff.obj karlin.obj drop_tff.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj faatran.obj $(NRAND).obj url_subs.obj getopt.obj
+       $(CL) /Fetfastf34_t.exe $(COMP_THRO) work_thr.obj $(THR_SUBS).obj compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_tf.obj drop_tff.obj scaleswtf.obj last_tat.obj tatstats_ff.obj karlin.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj faatran.obj $(NRAND).obj url_subs.obj getopt.obj $(THR_LIBS)
+
+tfasts34_t.exe : $(COMP_THRO) work_thr.obj $(THR_SUBS).obj compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj c_dispn.obj htime.obj apam.obj doinit.obj init_tfs.obj scaleswts.obj last_tat.obj tatstats_fs.obj karlin.obj drop_tfs.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj faatran.obj $(NRAND).obj url_subs.obj getopt.obj
+       $(CL) /Fetfasts34_t.exe $(COMP_THRO) work_thr.obj $(THR_SUBS).obj compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_tfs.obj drop_tfs.obj scaleswts.obj last_tat.obj tatstats_fs.obj karlin.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj faatran.obj $(NRAND).obj url_subs.obj getopt.obj $(THR_LIBS)
+
+tfastx34_t.exe : $(COMP_THRO) work_thr.obj $(THR_SUBS).obj compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_tfx.obj scaleswn.obj karlin.obj drop_tfx.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj faatran.obj url_subs.obj $(NRAND).obj getopt.obj
+       $(CL) /Fetfastx34_t.exe $(COMP_THRO) work_thr.obj $(THR_SUBS).obj compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_tfx.obj drop_tfx.obj scaleswn.obj karlin.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj faatran.obj url_subs.obj $(NRAND).obj getopt.obj $(THR_LIBS)
+
+tfasty34_t.exe : $(COMP_THRO) work_thr.obj $(THR_SUBS).obj compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_tfy.obj scaleswn.obj karlin.obj drop_tfz.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj faatran.obj url_subs.obj $(NRAND).obj getopt.obj
+       $(CL) /Fetfasty34_t.exe $(COMP_THRO) work_thr.obj $(THR_SUBS).obj compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_tfy.obj drop_tfz.obj scaleswn.obj karlin.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj faatran.obj url_subs.obj $(NRAND).obj getopt.obj $(THR_LIBS)
+
+prss34_t.exe : rcomp_thr.obj work_thr.obj $(THR_SUBS).obj compacc.obj htime.obj apam.obj doinit.obj init_rss.obj scaleswn.obj karlin.obj $(DROPRSS_O) llgetaa.obj showbest.obj $(SHOWALIGN).obj c_dispn.obj url_subs.obj lib_sel.obj $(NRAND).obj pssm_asn_subs.obj
+       $(CL) /Feprss34_t.exe rcomp_thr.obj work_thr.obj $(THR_SUBS).obj compacc.obj htime.obj apam.obj doinit.obj init_rss.obj $(DROPRSS_SSE2_O) scaleswn.obj karlin.obj llgetaa.obj showbest.obj  $(SHOWALIGN).obj c_dispn.obj url_subs.obj lib_sel.obj $(NRAND).obj pssm_asn_subs.obj getopt.obj $(THR_LIBS)
+
+prss34sse2_t.exe : rcomp_thr.obj work_thr.obj $(THR_SUBS).obj compacc.obj htime.obj apam.obj doinit.obj init_rss.obj scaleswn.obj karlin.obj $(DROPRSS_O) llgetaa.obj showbest.obj $(SHOWALIGN).obj c_dispn.obj url_subs.obj lib_sel.obj $(NRAND).obj pssm_asn_subs.obj
+       $(CL) /Feprss34sse2_t.exe rcomp_thr.obj work_thr.obj $(THR_SUBS).obj compacc.obj htime.obj apam.obj doinit.obj init_rss.obj $(DROPRSS_SSE2_O) scaleswn.obj karlin.obj llgetaa.obj showbest.obj  $(SHOWALIGN).obj c_dispn.obj url_subs.obj lib_sel.obj $(NRAND).obj pssm_asn_subs.obj getopt.obj $(THR_LIBS)
+
+prfx34_t.exe : rcomp_thr.obj work_thr.obj $(THR_SUBS).obj compacc.obj htime.obj apam.obj doinit.obj init_rfx.obj scaleswn.obj karlin.obj drop_fx.obj llgetaa.obj showbest.obj mshowalign.obj c_dispn.obj lib_sel.obj url_subs.obj $(NRAND).obj faatran.obj
+       $(CL) /Feprfx34_t.exe rcomp_thr.obj work_thr.obj $(THR_SUBS).obj compacc.obj htime.obj apam.obj doinit.obj init_rfx.obj drop_fx.obj scaleswn.obj karlin.obj llgetaa.obj showbest.obj mshowalign.obj c_dispn.obj lib_sel.obj faatran.obj url_subs.obj $(NRAND).obj getopt.obj $(THR_LIBS)
+
+comp_lib.obj : comp_lib.c mw.h structs.h defs.h param.h
+       $(CC) $(CFLAGS) -c comp_lib.c
+
+comp_mlib.obj : comp_lib.c mw.h structs.h defs.h param.h
+       $(CC) $(CFLAGS) -DCOMP_MLIB -c comp_lib.c /Focomp_mlib.obj
+
+rcomp_lib.obj : comp_lib.c mw.h structs.h defs.h param.h
+       $(CC) $(CFLAGS) -c -DPRSS comp_lib.c /Forcomp_lib.obj
+
+comp_thr.obj : comp_lib.c mw.h structs.h defs.h param.h thr.h
+       $(CC) $(CFLAGS) -DCOMP_THR -c comp_lib.c /Focomp_thr.obj
+
+comp_mthr.obj : comp_lib.c mw.h structs.h defs.h param.h thr.h
+       $(CC) $(CFLAGS) -DCOMP_THR -DCOMP_MLIB -c comp_lib.c /Focomp_mthr.obj
+
+rcomp_thr.obj : comp_lib.c mw.h structs.h defs.h param.h thr.h
+       $(CC) $(CFLAGS) -DPRSS -DCOMP_THR -c comp_lib.c /Forcomp_thr.obj
+
+work_thr.obj : work_thr.c mw.h structs.h defs.h param.h thr.h
+       $(CC) $(CFLAGS) -c work_thr.c
+
+print_pssm.exe : print_pssm.c getseq.c karlin.c apam.c
+       $(CC) /Feprint_pssm.exe $(CFLAGS) print_pssm.c getseq.c karlin.c apam.c getopt.obj
+
+map_db.exe : map_db.c  uascii.h ncbl2_head.h
+       $(CC) /Femap_db.exe map_db.c
+
+list_db.exe : list_db.c
+       $(CC) /Felist_db.exe list_db.c
+