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[jabaws.git] / website / archive / binaries / linux_x64 / fasta34 / test.sh

diff --git a/website/archive/binaries/linux_x64/fasta34/test.sh b/website/archive/binaries/linux_x64/fasta34/test.sh
deleted file mode 100644 (file)
index 36bf8df..0000000
--- a/website/archive/binaries/linux_x64/fasta34/test.sh
+++ /dev/null
@@ -1,83 +0,0 @@
-#!/bin/csh -f
-echo ""
-echo "starting fasta34_t - protein" `date` "on" `hostname`
-echo `uname -a`
-echo ""
-fasta34_t -q -m 6 -Z 100000 mgstm1.aa:1-100 q > test_m1.ok2_t.html
-fasta34_t -S -q -z 11 -O test_m1.ok2_t_p25 -s P250 mgstm1.aa:100-218 q
-echo "done"
-echo "starting fastxy34_t" `date`
-fastx34_t -m 9c -S -q mgtt2_x.seq q 1 > test_t2.xk1_t
-fasty34_t -S -q mgtt2_x.seq q > test_t2.yk2_t
-fastx34_t -m 9c -S -q -z 2 mgstm1.esq a > test_m1.xk2_tz2
-fasty34_t -S -q -z 2 mgstm1.esq a > test_m1.yk2_tz2
-echo "done"
-echo "starting fastxy34_t rev" `date`
-fastx34_t -m 9c -q -m 5 mgstm1.rev q > test_m1.xk2r_t
-fasty34_t -q -m 5 -M 200-300 -z 2 mgstm1.rev q > test_m1.yk2r_tz2
-fasty34_t -q -m 5 -z 11 mgstm1.rev q > test_m1.yk2rz11_t
-echo "done"
-echo "starting ssearch34_t" `date`
-ssearch34_t -m 9c -S -z 3 -q mgstm1.aa  q > test_m1.ss_tz3
-ssearch34_t -q -M 200-300 -z 2 -Z 100000 -s P250 mgstm1.aa q > test_m1.ss_t_p25
-echo "done"
-echo "starting prss34" `date`
-prss34_t -q -k 1000 -A mgstm1.aa xurt8c.aa  > test_m1.rss
-prfx34_t -q -k 1000 -A mgstm1.esq xurt8c.aa > test_m1.rfx
-echo "done"
-echo "starting fasta34_t - DNA" `date`
-fasta34_t -S -q -z 2 mgstm1.seq %RMB 4 > test_m1.ok4_tz2
-fasta34_t -S -q mgstm1.rev %RMB 4 > test_m1.ok4r_t
-echo "done"
-#echo "starting tfasta34_t" `date`
-#tfasta34_t -q mgstm1.aa %RMB > test_m1.tk2_t
-#echo "done"
-echo "starting tfastxy34_t" `date`
-tfastx34_t -m 9c -q -i -3 -m 6 mgstm1.aa %p > test_m1.tx2_t.html
-tfasty34_t -q -i -3 -N 5000 mgstm1.aa %p > test_m1.ty2_t
-echo "done"
-echo "starting fastf34_t" `date`
-fastf34_t -q m1r.aa q > test_mf.ff_t
-fastf34 -q m1r.aa q > test_mf.ff_s
-echo "done"
-echo "starting tfastf34_t" `date`
-tfastf34_t -q m1r.aa %r > test_mf.tf_tr
-echo "done"
-echo "starting fasts34_t" `date`
-fasts34_t -q -V '*?@' ngts.aa q > test_m1.fs1_t
-fasts34_t -q ngt.aa q > test_m1.fs_t
-fasts34_t -q -n mgstm1.nts m > test_m1.nfs_t
-echo "done"
-echo "starting tfasts34_t" `date`
-tfasts34_t -q n0.aa %r > test_m1.ts_r
-echo "done"
-echo "starting fasta34 - protein" `date`
-fasta34 -q -z 2 mgstm1.aa q 1 > test_m1.ok1z2
-fasta34 -q -s P250 mgstm1.aa q > test_m1.ok2_p25 
-echo "done"
-echo "starting fastx3" `date`
-fastx34 -m 9c -q mgstm1.esq q > test_m1.ok2x 
-echo "done"
-echo "starting fasty3" `date`
-fasty34 -q mgstm1.esq q > test_m1.ok2y 
-echo "done"
-echo "starting fasta34 - DNA " `date`
-fasta34 -m 9c -q mgstm1.seq %RMB 4 > test_m1.ok4 
-echo "done"
-echo "starting ssearch3" `date`
-ssearch34 -S -q -z 2 mgstm1.aa q > test_m1.ss_z2
-ssearch34 -S -q -s BL50  mgstm1.aa q > test_m1.ss_bl50
-ssearch34 -S -q -s blosum50.mat mgstm1.aa q > test_m1.ss_bl50f
-ssearch34 -q -s P250 mgstm1.aa q > test_m1.ss_p25 
-echo "done"
-#echo "starting tfasta3" `date`
-#tfasta34 -q mgstm1.aa %RMB > test_m1.tk2 
-#echo "done"
-echo "starting tfastxy3" `date`
-tfastx34 -q mgstm1.aa %RMB > test_m1.tx2 
-tfasty34 -m 9c -q mgstm1.aa %RMB > test_m1.ty2 
-echo "done"
-echo "starting fasts34" `date`
-fasts34 -q -V '@?*' ngts.aa q > test_m1.fs1
-fasts34 -q ngt.aa q > test_m1.fs
-echo "done" `date`