--- /dev/null
+# Makefile.in generated by automake 1.10.2 from Makefile.am.
+# @configure_input@
+
+# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002,
+# 2003, 2004, 2005, 2006, 2007, 2008 Free Software Foundation, Inc.
+# This Makefile.in is free software; the Free Software Foundation
+# gives unlimited permission to copy and/or distribute it,
+# with or without modifications, as long as this notice is preserved.
+
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
+# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
+# PARTICULAR PURPOSE.
+
+@SET_MAKE@
+
+
+
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+DIST_COMMON = $(library_include_HEADERS) $(srcdir)/Makefile.am \
+ $(srcdir)/Makefile.in $(srcdir)/config.h.in
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+libclustalo_la_DEPENDENCIES = clustal/libclustal.la \
+ hhalign/libhhalign.la squid/libsquid.la kmpp/libkmpp.la
+am_libclustalo_la_OBJECTS = clustal-omega.lo
+libclustalo_la_OBJECTS = $(am_libclustalo_la_OBJECTS)
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+top_srcdir = @top_srcdir@
+EXTRA_DIST = clustalo-api-test.c
+SUBDIRS = hhalign squid kmpp clustal
+
+# the following is the clustalo convenience library which wraps all
+# the other noinst libraries
+lib_LTLIBRARIES = libclustalo.la
+libclustalo_la_SOURCES = clustal-omega.c
+libclustalo_la_LIBADD = clustal/libclustal.la \
+ hhalign/libhhalign.la \
+ squid/libsquid.la \
+ kmpp/libkmpp.la
+
+libclustalo_la_LDFLAGS = -static
+library_includedir = $(includedir)/clustalo/
+library_include_HEADERS = clustal-omega-config.h clustal-omega.h
+clustalo_SOURCES = main.cpp \
+ mymain.c mymain.h
+
+clustalo_LDADD = libclustalo.la
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+ $(MAKE) $(AM_MAKEFLAGS) all-recursive
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+ && { if test -f $@; then exit 0; else break; fi; }; \
+ exit 1;; \
+ esac; \
+ done; \
+ echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu src/Makefile'; \
+ cd $(top_srcdir) && \
+ $(AUTOMAKE) --gnu src/Makefile
+.PRECIOUS: Makefile
+Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
+ @case '$?' in \
+ *config.status*) \
+ cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh;; \
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+ echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \
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+$(top_srcdir)/configure: $(am__configure_deps)
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+ cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
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+config.h: stamp-h1
+ @if test ! -f $@; then \
+ rm -f stamp-h1; \
+ $(MAKE) $(AM_MAKEFLAGS) stamp-h1; \
+ else :; fi
+
+stamp-h1: $(srcdir)/config.h.in $(top_builddir)/config.status
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+ cd $(top_builddir) && $(SHELL) ./config.status src/config.h
+$(srcdir)/config.h.in: $(am__configure_deps)
+ cd $(top_srcdir) && $(AUTOHEADER)
+ rm -f stamp-h1
+ touch $@
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+distclean-hdr:
+ -rm -f config.h stamp-h1
+install-libLTLIBRARIES: $(lib_LTLIBRARIES)
+ @$(NORMAL_INSTALL)
+ test -z "$(libdir)" || $(MKDIR_P) "$(DESTDIR)$(libdir)"
+ @list='$(lib_LTLIBRARIES)'; for p in $$list; do \
+ if test -f $$p; then \
+ f=$(am__strip_dir) \
+ echo " $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=install $(libLTLIBRARIES_INSTALL) $(INSTALL_STRIP_FLAG) '$$p' '$(DESTDIR)$(libdir)/$$f'"; \
+ $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=install $(libLTLIBRARIES_INSTALL) $(INSTALL_STRIP_FLAG) "$$p" "$(DESTDIR)$(libdir)/$$f"; \
+ else :; fi; \
+ done
+
+uninstall-libLTLIBRARIES:
+ @$(NORMAL_UNINSTALL)
+ @list='$(lib_LTLIBRARIES)'; for p in $$list; do \
+ p=$(am__strip_dir) \
+ echo " $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=uninstall rm -f '$(DESTDIR)$(libdir)/$$p'"; \
+ $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=uninstall rm -f "$(DESTDIR)$(libdir)/$$p"; \
+ done
+
+clean-libLTLIBRARIES:
+ -test -z "$(lib_LTLIBRARIES)" || rm -f $(lib_LTLIBRARIES)
+ @list='$(lib_LTLIBRARIES)'; for p in $$list; do \
+ dir="`echo $$p | sed -e 's|/[^/]*$$||'`"; \
+ test "$$dir" != "$$p" || dir=.; \
+ echo "rm -f \"$${dir}/so_locations\""; \
+ rm -f "$${dir}/so_locations"; \
+ done
+libclustalo.la: $(libclustalo_la_OBJECTS) $(libclustalo_la_DEPENDENCIES)
+ $(libclustalo_la_LINK) -rpath $(libdir) $(libclustalo_la_OBJECTS) $(libclustalo_la_LIBADD) $(LIBS)
+install-binPROGRAMS: $(bin_PROGRAMS)
+ @$(NORMAL_INSTALL)
+ test -z "$(bindir)" || $(MKDIR_P) "$(DESTDIR)$(bindir)"
+ @list='$(bin_PROGRAMS)'; for p in $$list; do \
+ p1=`echo $$p|sed 's/$(EXEEXT)$$//'`; \
+ if test -f $$p \
+ || test -f $$p1 \
+ ; then \
+ f=`echo "$$p1" | sed 's,^.*/,,;$(transform);s/$$/$(EXEEXT)/'`; \
+ echo " $(INSTALL_PROGRAM_ENV) $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=install $(binPROGRAMS_INSTALL) '$$p' '$(DESTDIR)$(bindir)/$$f'"; \
+ $(INSTALL_PROGRAM_ENV) $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=install $(binPROGRAMS_INSTALL) "$$p" "$(DESTDIR)$(bindir)/$$f" || exit 1; \
+ else :; fi; \
+ done
+
+uninstall-binPROGRAMS:
+ @$(NORMAL_UNINSTALL)
+ @list='$(bin_PROGRAMS)'; for p in $$list; do \
+ f=`echo "$$p" | sed 's,^.*/,,;s/$(EXEEXT)$$//;$(transform);s/$$/$(EXEEXT)/'`; \
+ echo " rm -f '$(DESTDIR)$(bindir)/$$f'"; \
+ rm -f "$(DESTDIR)$(bindir)/$$f"; \
+ done
+
+clean-binPROGRAMS:
+ @list='$(bin_PROGRAMS)'; for p in $$list; do \
+ f=`echo $$p|sed 's/$(EXEEXT)$$//'`; \
+ echo " rm -f $$p $$f"; \
+ rm -f $$p $$f ; \
+ done
+clustalo$(EXEEXT): $(clustalo_OBJECTS) $(clustalo_DEPENDENCIES)
+ @rm -f clustalo$(EXEEXT)
+ $(CXXLINK) $(clustalo_OBJECTS) $(clustalo_LDADD) $(LIBS)
+
+mostlyclean-compile:
+ -rm -f *.$(OBJEXT)
+
+distclean-compile:
+ -rm -f *.tab.c
+
+@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/clustal-omega.Plo@am__quote@
+@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/main.Po@am__quote@
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+
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+@am__fastdepCC_TRUE@ $(LTCOMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $<
+@am__fastdepCC_TRUE@ mv -f $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Plo
+@AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=yes @AMDEPBACKSLASH@
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+@am__fastdepCC_FALSE@ $(LTCOMPILE) -c -o $@ $<
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+@am__fastdepCXX_TRUE@ $(CXXCOMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $<
+@am__fastdepCXX_TRUE@ mv -f $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po
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+@am__fastdepCXX_FALSE@ $(CXXCOMPILE) -c -o $@ $<
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+
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+ -rm -rf .libs _libs
+install-library_includeHEADERS: $(library_include_HEADERS)
+ @$(NORMAL_INSTALL)
+ test -z "$(library_includedir)" || $(MKDIR_P) "$(DESTDIR)$(library_includedir)"
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+ f=$(am__strip_dir) \
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+
+# This directory's subdirectories are mostly independent; you can cd
+# into them and run `make' without going through this Makefile.
+# To change the values of `make' variables: instead of editing Makefiles,
+# (1) if the variable is set in `config.status', edit `config.status'
+# (which will cause the Makefiles to be regenerated when you run `make');
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+ case $$f in \
+ *=* | --[!k]*);; \
+ *k*) failcom='fail=yes';; \
+ esac; \
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+ dot_seen=no; \
+ case "$@" in \
+ distclean-* | maintainer-clean-*) list='$(DIST_SUBDIRS)' ;; \
+ *) list='$(SUBDIRS)' ;; \
+ esac; \
+ rev=''; for subdir in $$list; do \
+ if test "$$subdir" = "."; then :; else \
+ rev="$$subdir $$rev"; \
+ fi; \
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+ rev="$$rev ."; \
+ target=`echo $@ | sed s/-recursive//`; \
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git://source.jalview.org / jabaws.git / blobdiff