--- /dev/null
+AM_CFLAGS = @OPENMP_CFLAGS@ @AM_CFLAGS@
+AM_LDFLAGS = @AM_LDFLAGS@
+
+noinst_LTLIBRARIES = libclustal.la
+
+libclustal_la_SOURCES = \
+ hhalign_wrapper.c hhalign_wrapper.h \
+ ktuple_pair.c ktuple_pair.h \
+ list.c list.h \
+ log.c log.h \
+ muscle_upgma.c muscle_upgma.h \
+ muscle_tree.c muscle_tree.h \
+ mbed.c mbed.h \
+ pair_dist.h pair_dist.c \
+ progress.c progress.h \
+ queue.h \
+ seq.c seq.h \
+ symmatrix.c symmatrix.h \
+ tree.c tree.h \
+ util.c util.h \
+ weights.c weights.h
+
+library_includedir=$(includedir)/clustalo/clustal
+
+library_include_HEADERS = \
+ hhalign_wrapper.h \
+ ktuple_pair.h \
+ log.h \
+ mbed.h \
+ muscle_tree.h \
+ pair_dist.h \
+ progress.h \
+ seq.h \
+ symmatrix.h \
+ tree.h \
+ util.h \
+ weights.h
+