--- /dev/null
+/*********************************************************************
+ * Clustal Omega - Multiple sequence alignment
+ *
+ * Copyright (C) 2010 University College Dublin
+ *
+ * Clustal-Omega is free software; you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License as
+ * published by the Free Software Foundation; either version 2 of the
+ * License, or (at your option) any later version.
+ *
+ * This file is part of Clustal-Omega.
+ *
+ ********************************************************************/
+
+/*
+ * RCS $Id: hhalign_wrapper.h 241 2011-05-04 14:37:17Z fabian $
+ */
+
+
+extern double
+HHalignWrapper(mseq_t *mseq, int *piOrderLR,
+ double *pdSeqWeights, int iNodeCount,
+ hmm_light *prHMMList, int iHMMCount,
+ int iProfProfSeparator, hhalign_para rHhalignPara);