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[jabaws.git] / website / archive / binaries / mac / src / clustalo / src / clustal / muscle_upgma.h

diff --git a/website/archive/binaries/mac/src/clustalo/src/clustal/muscle_upgma.h b/website/archive/binaries/mac/src/clustalo/src/clustal/muscle_upgma.h
deleted file mode 100644 (file)
index 64d8352..0000000
--- a/website/archive/binaries/mac/src/clustalo/src/clustal/muscle_upgma.h
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@@ -1,43 +0,0 @@
-/* This the fast UPGMA algorithm (O(N^2)) as implemented in Bob Edgar's
- * Muscle (UPGMA2.cpp; version 3.7) ported to pure C.
- *
- * Muscle's code is public domain and so is this code here.
- *
- * From http://www.drive5.com/muscle/license.htm:
- * """
- * MUSCLE is public domain software
- *
- * The MUSCLE software, including object and source code and
- * documentation, is hereby donated to the public domain.
- *
- * Disclaimer of warranty
- * THIS SOFTWARE IS PROVIDED "AS IS" WITHOUT WARRANTY OF ANY KIND,
- * EITHER EXPRESS OR IMPLIED, INCLUDING WITHOUT LIMITATION IMPLIED
- * WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
- * """
- *
- */
-
-/*
- *  RCS $Id: muscle_upgma.h 193 2011-02-07 15:45:21Z andreas $
- */
-
-#ifndef CLUSTALO_UPGMA_H
-#define CLUSTALO_UPGMA_H
-
-#include "symmatrix.h"
-#include "muscle_tree.h"
-
-enum linkage_e {
-    LINKAGE_MIN,
-    LINKAGE_AVG,
-    LINKAGE_MAX,
-    LINKAGE_NEIGHBORJOINING,
-    LINKAGE_BIASED
-};
-typedef enum linkage_e linkage_t;
-
-void MuscleUpgma2(tree_t *tree, symmatrix_t *distmat,
-                   linkage_t linkage, char **names);
-
-#endif