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[jabaws.git] / website / archive / binaries / mac / src / clustalo / src / clustal / pair_dist.h

diff --git a/website/archive/binaries/mac/src/clustalo/src/clustal/pair_dist.h b/website/archive/binaries/mac/src/clustalo/src/clustal/pair_dist.h
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--- a/website/archive/binaries/mac/src/clustalo/src/clustal/pair_dist.h
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-/*********************************************************************
- * Clustal Omega - Multiple sequence alignment
- *
- * Copyright (C) 2010 University College Dublin
- *
- * Clustal-Omega is free software; you can redistribute it and/or
- * modify it under the terms of the GNU General Public License as
- * published by the Free Software Foundation; either version 2 of the
- * License, or (at your option) any later version.
- *
- * This file is part of Clustal-Omega.
- *
- ********************************************************************/
-
-/*
- *  RCS $Id: pair_dist.h 193 2011-02-07 15:45:21Z andreas $
- */
-
-
-#ifndef CLUSTALO_PAIR_DIST_H
-#define CLUSTALO_PAIR_DIST_H
-
-#define PAIRDIST_UNKNOWN 0
-/* k-tuple distances: Wilbur and Lipman (1983) */
-#define PAIRDIST_KTUPLE 1
-/* fractional identity between aligned sequences. denominator is
- * minimum seq len (see squid:aligneval.c) */
-#define PAIRDIST_SQUIDID 2
-/* SQUIDID + Kimura correction */
-#define PAIRDIST_SQUIDID_KIMURA 3
-
-#include "seq.h"
-#include "symmatrix.h"
-
-extern int
-PairDistances(symmatrix_t **distmat, mseq_t *mseq, const int pairdist_type,
-              const int istart, const int iend,
-              const int jstart, const int jend,
-              char *fdist_in, char *fdist_out);
-
-#endif
-