Delete unneeded directory

[jabaws.git] / website / archive / binaries / mac / src / clustalo / src / clustal / progress.c

diff --git a/website/archive/binaries/mac/src/clustalo/src/clustal/progress.c b/website/archive/binaries/mac/src/clustalo/src/clustal/progress.c
deleted file mode 100644 (file)
index 57c99f5..0000000
--- a/website/archive/binaries/mac/src/clustalo/src/clustal/progress.c
+++ /dev/null
@@ -1,177 +0,0 @@
-/* -*- mode: c; tab-width: 4; c-basic-offset: 4;  indent-tabs-mode: nil -*- */
-
-/*********************************************************************
- * Clustal Omega - Multiple sequence alignment
- *
- * Copyright (C) 2010 University College Dublin
- *
- * Clustal-Omega is free software; you can redistribute it and/or
- * modify it under the terms of the GNU General Public License as
- * published by the Free Software Foundation; either version 2 of the
- * License, or (at your option) any later version.
- *
- * This file is part of Clustal-Omega.
- *
- ********************************************************************/
-
-/*
- *  RCS $Id: progress.c 230 2011-04-09 15:37:50Z andreas $
- */
-
-#ifdef HAVE_CONFIG_H
-#include "config.h"
-#endif
-
-#include <stdlib.h>
-#include <stdio.h>
-#include <assert.h>
-
-#include "util.h"
-#include "log.h"
-#include "progress.h"
-
-#define LOGLEVEL_THRESHOLD LOG_INFO
-
-/**
- * @brief Allocates a new progress structure and initialises its members.
- * Free with FreeProgress()
- *
- * @note Starts the internal stopwatch immediatly!
- *
- * @see FreeProgress()
- *
- * @param[out] pprProgress
- * Pointer pointer to progress structure. Progress structure will be
- * allocated here. 
- * @param[in] prFile
- * Where to log messages to
- * @param[in] pcPrefix
- * What prefix to use for messages
- * @param[in] bPrintCR
- * If TRUE carriage return instead of newline will be printed between log messages
- */    
-void
-NewProgress(progress_t **pprProgress, FILE *prFile,
-            char *pcPrefix, bool bPrintCR)
-{
-    assert(NULL!=pprProgress);
-    assert(NULL!=prFile);
-    assert(NULL!=pcPrefix);
-    
-    (*pprProgress) = (progress_t *) CKMALLOC(1*sizeof(progress_t));
-    (*pprProgress)->prFile = prFile;
-    (*pprProgress)->bPrintCR = bPrintCR;    
-    (*pprProgress)->pcPrefix = CkStrdup(pcPrefix);
-    strcpy((*pprProgress)->pcLastLogMsg, "\0");
-    (*pprProgress)->prStopwatch = StopwatchCreate();
-    StopwatchZero((*pprProgress)->prStopwatch);
-    StopwatchStart((*pprProgress)->prStopwatch);
-    
-    return; 
-}
-/***   end: NewProgress()   ***/
-
-
-
-/**
- * @brief Frees progress structure and its members
- *
- * @param[out] pprProgress
- * Pointer pointer to progress structure
- *
- * @see NewProgress()
- * 
- */    
-void
-FreeProgress(progress_t **pprProgress)
-{
-    (*pprProgress)->prFile = NULL;
-    CKFREE((*pprProgress)->pcPrefix);
-    StopwatchFree((*pprProgress)->prStopwatch);
-
-    CKFREE(*pprProgress);
-    return; 
-}
-/***   end: FreeProgress()   ***/
-
-
-
-
-/**
- * @brief Prints a progress update (and a carriage return)
- *
- * @param[in] prProgress
- * Pointer to the progress structure
- * @param[in] iStep
- * Current step number
- * @param[in] iTotalSteps
- * Total step number
- * @param[in] bForceOutput
- * If percentage hasn't changed output is normally supressed
- * normally. Output can be forced with this flag.
- *
- */    
-void
-ProgressLog(progress_t *prProgress, 
-            unsigned long int iStep, unsigned long int iTotalSteps, 
-            bool bForceOutput)
-{
-    char pcLogMsg[1024];
-    assert(0!=iTotalSteps);
-    
-    if (rLog.iLogLevelEnabled>LOGLEVEL_THRESHOLD) {
-        return;
-    }
-    
-    (void) snprintf(pcLogMsg, sizeof(pcLogMsg), "%s: %lu %%",
-                    prProgress->pcPrefix, (unsigned long int)(iStep/(float)iTotalSteps*100.0));
-
-    if (! bForceOutput) {
-        /* Skip logging, if we've just logged the same message */
-        if (STR_EQ(pcLogMsg, prProgress->pcLastLogMsg)) {
-            return;
-        }
-    }
-
-    strncpy(prProgress->pcLastLogMsg, pcLogMsg,
-            sizeof(prProgress->pcLastLogMsg));
-    
-    fprintf(prProgress->prFile, "%s (%lu out of %lu)", pcLogMsg, iStep, iTotalSteps);
-    if (prProgress->bPrintCR) {
-        fprintf(prProgress->prFile, "\r");
-    } else {
-        fprintf(prProgress->prFile, "\n");
-
-    }
-    (void) fflush(prProgress->prFile);
-
-    return; 
-}
-/***   end: ProgressLog()   ***/
-
-
-/**
- * @brief Finishes progress output by printing the elapsed time
- *
- * @param[in] prProgress
- * Pointer to the progress structure
- *
- */    
-void
-ProgressDone(progress_t *prProgress)
-{
-    char pcBuf[1024];
-
-    if (rLog.iLogLevelEnabled>LOGLEVEL_THRESHOLD) {
-        return;
-    }
-
-    (void) snprintf(pcBuf, sizeof(pcBuf), "%s done. CPU time: ", 
-                    prProgress->pcPrefix);
-    StopwatchStop(prProgress->prStopwatch);
-    StopwatchDisplay(prProgress->prFile, pcBuf, prProgress->prStopwatch);
-    (void) fflush(prProgress->prFile);
-
-    return; 
-}
-/***   end: ProgressDone()   ***/